View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2603_low_21 (Length: 252)

Name: NF2603_low_21
Description: NF2603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2603_low_21
NF2603_low_21
[»] chr4 (9 HSPs)
chr4 (36-241)||(43498167-43498372)
chr4 (37-241)||(36652718-36652922)
chr4 (28-241)||(9897535-9897747)
chr4 (27-241)||(37871684-37871898)
chr4 (36-220)||(39060716-39060900)
chr4 (27-241)||(48639582-48639796)
chr4 (35-241)||(47591490-47591696)
chr4 (111-241)||(23108801-23108928)
chr4 (163-219)||(40346769-40346825)
[»] scaffold0300 (1 HSPs)
scaffold0300 (28-241)||(8433-8646)
[»] chr8 (3 HSPs)
chr8 (28-241)||(8445284-8445497)
chr8 (27-241)||(13090812-13091026)
chr8 (35-140)||(5456792-5456897)
[»] chr2 (1 HSPs)
chr2 (36-238)||(27270518-27270720)
[»] chr1 (5 HSPs)
chr1 (26-241)||(34548216-34548431)
chr1 (36-241)||(31912590-31912795)
chr1 (120-241)||(26675843-26675964)
chr1 (27-106)||(11468311-11468390)
chr1 (1-31)||(6735878-6735908)
[»] chr6 (5 HSPs)
chr6 (27-241)||(12913285-12913499)
chr6 (35-219)||(7092786-7092969)
chr6 (136-241)||(14168173-14168278)
chr6 (27-106)||(8754089-8754168)
chr6 (186-222)||(14168273-14168309)
[»] chr3 (2 HSPs)
chr3 (27-241)||(17914137-17914351)
chr3 (26-242)||(15028937-15029153)
[»] chr7 (9 HSPs)
chr7 (27-224)||(17194914-17195113)
chr7 (35-219)||(38141102-38141286)
chr7 (35-238)||(5554622-5554825)
chr7 (35-238)||(19323083-19323286)
chr7 (35-238)||(29126891-29127094)
chr7 (120-241)||(25289623-25289743)
chr7 (120-241)||(40859058-40859179)
chr7 (37-75)||(28507010-28507048)
chr7 (61-106)||(19293613-19293658)
[»] chr5 (1 HSPs)
chr5 (27-241)||(26369970-26370184)
[»] scaffold0432 (1 HSPs)
scaffold0432 (38-238)||(7965-8165)


Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 36 - 241
Target Start/End: Original strand, 43498167 - 43498372
Alignment:
36 ggaatttaatttagctttacttggtaaatggtgttggcggatgcgggttgaaaatagaagtttgtggtatagtattttatctgctagatacggtgaggta 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||    
43498167 ggaatttaatttagctttacttggtaaatggtgttggcggatgcgggttgaaaatagaagtttgtggtatagcgttttatctgctagatacggtggggta 43498266  T
136 ggaggtaaaattgtcgaggatgggcggtttaactctatttggtggaatattttgataaatgttaaaaatggggctggagtgggaggtgggagttggtttg 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||    
43498267 ggaggtaaaattgtcgaggatgggcggtttaactctatttggtggaataatttgataaatgttaaaaatggggctggtgtgggaggtgggagttggattg 43498366  T
236 atgata 241  Q
    ||||||    
43498367 atgata 43498372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 37 - 241
Target Start/End: Complemental strand, 36652922 - 36652718
Alignment:
37 gaatttaatttagctttacttggtaaatggtgttggcggatgcgggttgaaaatagaagtttgtggtatagtattttatctgctagatacggtgaggtag 136  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||    
36652922 gaatttaacttagctttacttggtaaatggtgttggcggatgcgggttgaaaatagaagtttgtggtatagagttttatttgctagatacggtgaggtag 36652823  T
137 gaggtaaaattgtcgaggatgggcggtttaactctatttggtggaatattttgataaatgttaaaaatggggctggagtgggaggtgggagttggtttga 236  Q
    |||||||||||| |||  ||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||    
36652822 gaggtaaaattgccgaacatgggcggtttaactctgtttggtggaataatttgataaatgttaaaaatggggatggtgtgggaggtgggagttggtttga 36652723  T
237 tgata 241  Q
    |||||    
36652722 tgata 36652718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 28 - 241
Target Start/End: Complemental strand, 9897747 - 9897535
Alignment:
28 aggatttgggaatttaatttagctttacttggtaaatggtgttggcggatgcgggttgaaaatagaagtttgtggtatagtattttatctgctagatacg 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||  ||||||| | ||||||||    
9897747 aggatttgggaatttaatttagctttacttggtaaatggtgttggcggatgcgggttgtaaataggagtttgtggtatagagttttatcagttagatacg 9897648  T
128 gtgaggtaggaggtaaaattgtcgaggatgggcggtttaactctatttggtggaatattttgataaatgttaaaaatggggctggagtgggaggtgggag 227  Q
    |  |||||||||||||||| |||||||| ||||||||||||| | || ||||||||| ||||||||||||||||||| ||||||| ||||||||||||||    
9897647 gataggtaggaggtaaaatcgtcgaggaggggcggtttaactttgttcggtggaataatttgataaatgttaaaaat-gggctggtgtgggaggtgggag 9897549  T
228 ttggtttgatgata 241  Q
    ||||||||||||||    
9897548 ttggtttgatgata 9897535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 27 - 241
Target Start/End: Complemental strand, 37871898 - 37871684
Alignment:
27 gaggatttgggaatttaatttagctttacttggtaaatggtgttggcggatgcgggttgaaaatagaagtttgtggtatagtattttatctgctagatac 126  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||  ||||||||||||||  ||||||| || |||||     
37871898 gaggattagggaatttaatttggctttacttggtaaatggtgttggtggatgcgggttgagaatatgagtttgtggtatagagttttatcagccagatat 37871799  T
127 ggtgaggtaggaggtaaaattgtcgaggatgggcggtttaactctatttggtggaatattttgataaatgttaaaaatggggctggagtgggaggtggga 226  Q
    |||||||||||||||||||| | |||||| ||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||     
37871798 ggtgaggtaggaggtaaaatagccgaggaggggaggtttaactctgtttggtggaataatttgataaatgttaaaaatggggctggcgtgggaggtgggc 37871699  T
227 gttggtttgatgata 241  Q
      |||||||||||||    
37871698 agtggtttgatgata 37871684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 36 - 220
Target Start/End: Complemental strand, 39060900 - 39060716
Alignment:
36 ggaatttaatttagctttacttggtaaatggtgttggcggatgcgggttgaaaatagaagtttgtggtatagtattttatctgctagatacggtgaggta 135  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||| ||||||| ||| ||||||    
39060900 ggaatttaatttagctttacttggtaaatggtgttggcggatgcgggttgaaaataggagtttgtggtatagagttttatcagctagatgcggagaggta 39060801  T
136 ggaggtaaaattgtcgaggatgggcggtttaactctatttggtggaatattttgataaatgttaaaaatggggctggagtgggag 220  Q
    | ||||||||| | | |||| ||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||| |||||||    
39060800 gaaggtaaaatcgccaaggaggggcggtttaactctgtttggtagaataatttgataaatgttaaaaatggggctggtgtgggag 39060716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 27 - 241
Target Start/End: Original strand, 48639582 - 48639796
Alignment:
27 gaggatttgggaatttaatttagctttacttggtaaatggtgttggcggatgcgggttgaaaatagaagtttgtggtatagtattttatctgctagatac 126  Q
    ||||||| |||| |||||||| || ||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||  || || | | ||||||     
48639582 gaggattcgggagtttaatttggcattacttggtaaatggtgttggcatatgcgggttgaaaataggagtttgtggtatagagttatagcaggtagatat 48639681  T
127 ggtgaggtaggaggtaaaattgtcgaggatgggcggtttaactctatttggtggaatattttgataaatgttaaaaatggggctggagtgggaggtggga 226  Q
    || ||||||||||||| ||| |  ||||| |||| |||||| ||| ||| |||||||| ||| |||||| | |||||||||||||| ||||||||||||     
48639682 ggggaggtaggaggtataatcgcagaggaggggcagtttaattctgtttagtggaataatttaataaatataaaaaatggggctggtgtgggaggtgggt 48639781  T
227 gttggtttgatgata 241  Q
    | |||||||||||||    
48639782 ggtggtttgatgata 48639796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 35 - 241
Target Start/End: Complemental strand, 47591696 - 47591490
Alignment:
35 gggaatttaatttagctttacttggtaaatggtgttggcggatgcgggttgaaaatagaagtttgtggtatagtattttatctgctagatacggtgaggt 134  Q
    |||| |||||||| || ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||  || || | | |||||| || |||||    
47591696 gggagtttaatttggcattacttggtaaatggtgttggcgtatgcgggttgaaaataggagtttgtggtatagagttctagcaggtagatatggggaggt 47591597  T
135 aggaggtaaaattgtcgaggatgggcggtttaactctatttggtggaatattttgataaatgttaaaaatggggctggagtgggaggtgggagttggttt 234  Q
    |||||||| ||| |  ||||| || |  ||||| ||| |||||||||||| ||| |||||| | |||||||||||||| |||||||||||| | ||||||    
47591596 aggaggtataatcgcagaggagggacaatttaattctgtttggtggaataatttaataaatataaaaaatggggctggtgtgggaggtgggcggtggttt 47591497  T
235 gatgata 241  Q
    |||||||    
47591496 gatgata 47591490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 111 - 241
Target Start/End: Complemental strand, 23108928 - 23108801
Alignment:
111 tttatctgctagatacggtgaggtaggaggtaaaattgtcgaggatgggcggtttaactctatttggtggaatattttgataaatgttaaaaatggggct 210  Q
    |||||| || |||||||| |||||||||||||||||   |||||| ||| |||||||||||  ||||||||||| |||||||||||||||||||||||||    
23108928 tttatcagccagatacggagaggtaggaggtaaaatccccgaggaggggaggtttaactct--ttggtggaataatttgataaatgttaaaaatggggct 23108831  T
211 ggagtgggaggtgggagttggtttgatgata 241  Q
     | ||||||||| || | |||||||||||||    
23108830 cgtgtgggaggt-ggcggtggtttgatgata 23108801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 219
Target Start/End: Complemental strand, 40346825 - 40346769
Alignment:
163 tttaactctatttggtggaatattttgataaatgttaaaaatggggctggagtggga 219  Q
    ||||||||| |||||||||||| |||||| ||| ||||||||||||| || ||||||    
40346825 tttaactctgtttggtggaataatttgattaatattaaaaatggggccggtgtggga 40346769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 28 - 241
Target Start/End: Original strand, 8433 - 8646
Alignment:
28 aggatttgggaatttaatttagctttacttggtaaatggtgttggcggatgcgggttgaaaatagaagtttgtggtatagtattttatctgctagatacg 127  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |    
8433 aggattcgggaatttaatttggctttacttggtaaatggtgttggcggatgcgggttgaaaatagaagtttgtggtatagagttttatctgctagatatg 8532  T
128 gtgaggtaggaggtaaaattgtcgaggatgggcggtttaactctatttggtggaatattttgataaatgttaaaaatggggctggagtgggaggtgggag 227  Q
    ||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
8533 gtgaggtaggatgtaaaattgccgaggatgggcggtttaactctgtttggtggaataatttgataaatgttaaaaatggggctggtgtgggaggtgggag 8632  T
228 ttggtttgatgata 241  Q
    ||||||||||||||    
8633 ttggtttgatgata 8646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 28 - 241
Target Start/End: Complemental strand, 8445497 - 8445284
Alignment:
28 aggatttgggaatttaatttagctttacttggtaaatggtgttggcggatgcgggttgaaaatagaagtttgtggtatagtattttatctgctagatacg 127  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||      
8445497 aggattcgggaatttaatttggctttacttggtaaatggtgttggcggatgcgggttgaaaatagaagtttgtggtatagcgttttatctgctagatata 8445398  T
128 gtgaggtaggaggtaaaattgtcgaggatgggcggtttaactctatttggtggaatattttgataaatgttaaaaatggggctggagtgggaggtgggag 227  Q
    ||||||||||||||||||||| |||||||| ||||||||| ||| |||||||||||| |||||||||||||||||||| |||||| ||||||||||||||    
8445397 gtgaggtaggaggtaaaattgccgaggatgagcggtttaattctgtttggtggaataatttgataaatgttaaaaatgaggctggtgtgggaggtgggag 8445298  T
228 ttggtttgatgata 241  Q
    ||||||||||||||    
8445297 ttggtttgatgata 8445284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 27 - 241
Target Start/End: Complemental strand, 13091026 - 13090812
Alignment:
27 gaggatttgggaatttaatttagctttacttggtaaatggtgttggcggatgcgggttgaaaatagaagtttgtggtatagtattttatctgctagatac 126  Q
    ||||||| || |||||||||| |||||||||| |||||||| |||||||||||||||||| ||||  ||||||||||||||  ||||||| || |||||     
13091026 gaggattaggaaatttaatttggctttacttgataaatggtattggcggatgcgggttgagaatatgagtttgtggtatagagttttatcagccagatat 13090927  T
127 ggtgaggtaggaggtaaaattgtcgaggatgggcggtttaactctatttggtggaatattttgataaatgttaaaaatggggctggagtgggaggtggga 226  Q
    |||||||||||||||||||| | |||||| ||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||     
13090926 ggtgaggtaggaggtaaaatagccgaggaggggaggtttaactctgtttggtggaataatttgataaatgttaaaaatggggctggtgtgggaggtgggc 13090827  T
227 gttggtttgatgata 241  Q
    | |||||||||||||    
13090826 ggtggtttgatgata 13090812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 140
Target Start/End: Complemental strand, 5456897 - 5456792
Alignment:
35 gggaatttaatttagctttacttggtaaatggtgttggcggatgcgggttgaaaatagaagtttgtggtatagtattttatctgctagatacggtgaggt 134  Q
    |||| |||||||| || |||| || ||||||||||||| ||||   |||||||||||| ||||||||||||||  ||||| |  |  ||||||| |||||    
5456897 gggagtttaatttggcgttacgtgttaaatggtgttggaggattatggttgaaaataggagtttgtggtatagagttttagcatcacgatacggggaggt 5456798  T
135 aggagg 140  Q
    ||||||    
5456797 aggagg 5456792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 36 - 238
Target Start/End: Original strand, 27270518 - 27270720
Alignment:
36 ggaatttaatttagctttacttggtaaatggtgttggcggatgcgggttgaaaatagaagtttgtggtatagtattttatctgctagatacggtgaggta 135  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||| ||||||||||||||||||    
27270518 ggaatttaatttggctttacttggtaaatggtgttggcggatgcgggttgaaaataggagtttgtggtatagagttttatcagctagatacggtgaggta 27270617  T
136 ggaggtaaaattgtcgaggatgggcggtttaactctatttggtggaatattttgataaatgttaaaaatggggctggagtgggaggtgggagttggtttg 235  Q
    ||||||||||| | ||||||| ||| |||||||||| |||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||    
27270618 ggaggtaaaatcgccgaggatcggcagtttaactctgtttggtggaataatttgataaatgttaaaaatggagctggtgtgggaggtgggagttggtttg 27270717  T
236 atg 238  Q
    |||    
27270718 atg 27270720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 26 - 241
Target Start/End: Original strand, 34548216 - 34548431
Alignment:
26 agaggatttgggaatttaatttagctttacttggtaaatggtgttggcggatgcgggttgaaaatagaagtttgtggtatagtattttatctgctagata 125  Q
    |||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||  ||||||||||||||  ||||||| || |||||    
34548216 agaggattagggaatttaatttggctttacttggtaaatggtgctggcggatgcgggttgagaatatgagtttgtggtatagagttttatcagccagata 34548315  T
126 cggtgaggtaggaggtaaaattgtcgaggatgggcggtttaactctatttggtggaatattttgataaatgttaaaaatggggctggagtgggaggtggg 225  Q
     |||||||||||||||||||| | |||||| ||  ||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||| |    
34548316 tggtgaggtaggaggtaaaatagccgaggagggaaggtttaactctgtttggtggaataatttgataaatgttaaaaatggggctggtgtgggaggtgag 34548415  T
226 agttggtttgatgata 241  Q
    || |||| ||||||||    
34548416 agatggtatgatgata 34548431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 36 - 241
Target Start/End: Complemental strand, 31912795 - 31912590
Alignment:
36 ggaatttaatttagctttacttggtaaatggtgttggcggatgcgggttgaaaatagaagtttgtggtatagtattttatctgctagatacggtgaggta 135  Q
    |||||||||||| | ||||| |||||||| ||||||| ||||||| ||| |||| || ||||||||||||||  ||||| | ||||||||||| ||||||    
31912795 ggaatttaatttggatttacatggtaaatagtgttggtggatgcgagttcaaaagaggagtttgtggtatagagttttagcagctagatacggcgaggta 31912696  T
136 ggaggtaaaattgtcgaggatgggcggtttaactctatttggtggaatattttgataaatgttaaaaatggggctggagtgggaggtgggagttggtttg 235  Q
    ||||||||||| |  |||||  || ||||||||||| ||||||| |||| |||||||||| | |||||||||||||| |||||||||||| | |||||||    
31912695 ggaggtaaaatcgcagaggagtggtggtttaactctgtttggtgtaataatttgataaatataaaaaatggggctggtgtgggaggtgggcggtggtttg 31912596  T
236 atgata 241  Q
    | ||||    
31912595 acgata 31912590  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 120 - 241
Target Start/End: Original strand, 26675843 - 26675964
Alignment:
120 tagatacggtgaggtaggaggtaaaattgtcgaggatgggcggtttaactctatttggtggaatattttgataaatgttaaaaatggggctggagtggga 219  Q
    |||||| || ||||||||||||| ||| |  ||||| ||||||||||| ||| |||||||||||| ||| |||||| | |||||||||| ||| ||||||    
26675843 tagatatggggaggtaggaggtataatcgcagaggaggggcggtttaattctgtttggtggaataatttaataaatataaaaaatggggttggtgtggga 26675942  T
220 ggtgggagttggtttgatgata 241  Q
    |||||| | |||||||||||||    
26675943 ggtgggcggtggtttgatgata 26675964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 11468311 - 11468390
Alignment:
27 gaggatttgggaatttaatttagctttacttggtaaatggtgttggcggatgcgggttgaaaatagaagtttgtggtata 106  Q
    |||||||||||||||||| |||||  | ||||| ||||||||||||  |||| ||| |||||| ||||||||||||||||    
11468311 gaggatttgggaatttaacttagcgcttcttggcaaatggtgttggaagatgagggctgaaaagagaagtttgtggtata 11468390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 6735878 - 6735908
Alignment:
1 ttatctacatagacaaagaagtttgagagga 31  Q
    |||||||||||||||||||||||||||||||    
6735878 ttatctacatagacaaagaagtttgagagga 6735908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 123; Significance: 3e-63; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 27 - 241
Target Start/End: Complemental strand, 12913499 - 12913285
Alignment:
27 gaggatttgggaatttaatttagctttacttggtaaatggtgttggcggatgcgggttgaaaatagaagtttgtggtatagtattttatctgctagatac 126  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||  ||||||||||||||  ||||||| || | |||     
12913499 gaggattagggaatttaatttggctttacttggtaaatggtgttggcggctgcgggttgagaatatgagtttgtggtatagagttttatcagccaaatat 12913400  T
127 ggtgaggtaggaggtaaaattgtcgaggatgggcggtttaactctatttggtggaatattttgataaatgttaaaaatggggctggagtgggaggtggga 226  Q
    |||||||||||||||||||| | |||||| ||  ||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||     
12913399 ggtgaggtaggaggtaaaatagccgaggagggaaggtttaactctgtttggtggaataatttgataaatgttaaaaatggggctggtgtgggaggtgggc 12913300  T
227 gttggtttgatgata 241  Q
    | |||| ||||||||    
12913299 ggtggtctgatgata 12913285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 35 - 219
Target Start/End: Original strand, 7092786 - 7092969
Alignment:
35 gggaatttaatttagctttacttggtaaatggtgttggcggatgcgggttgaaaatagaagtttgtggtatagtattttatctgctagatacggtgaggt 134  Q
    |||| |||||||| || ||||||| ||||||||||||| ||||  ||||||||||||| ||||||||||||||  ||||| |  |  ||||||| |||||    
7092786 gggagtttaatttggcgttacttgttaaatggtgttggaggattagggttgaaaataggagtttgtggtatagagttttagcatcacgatacggggaggt 7092885  T
135 aggaggtaaaattgtcgaggatgggcggtttaactctatttggtggaatattttgataaatgttaaaaatggggctggagtggga 219  Q
    |||||| | ||| |  ||||| ||||| ||||||||| |||||||||||| |||||| ||| |||||||||||||||| ||||||    
7092886 aggaggaataatcgatgagga-gggcgatttaactctgtttggtggaataatttgattaatattaaaaatggggctggtgtggga 7092969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 136 - 241
Target Start/End: Complemental strand, 14168278 - 14168173
Alignment:
136 ggaggtaaaattgtcgaggatgggcggtttaactctatttggtggaatattttgataaatgttaaaaatggggctggagtgggaggtgggagttggtttg 235  Q
    ||||||||||| | |||||| ||| ||| |||| || |||||||||||| ||||||||||||||||||||||||||| |||||||||||| | |||||||    
14168278 ggaggtaaaatagccgaggaggggaggtctaaccctgtttggtggaataatttgataaatgttaaaaatggggctggtgtgggaggtgggcggtggtttg 14168179  T
236 atgata 241  Q
    ||||||    
14168178 atgata 14168173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 27 - 106
Target Start/End: Complemental strand, 8754168 - 8754089
Alignment:
27 gaggatttgggaatttaatttagctttacttggtaaatggtgttggcggatgcgggttgaaaatagaagtttgtggtata 106  Q
    ||||||| ||||||||||| ||||  ||||||| |||||||||||| ||||| |||||||||| || |||||||||||||    
8754168 gaggattagggaatttaatctagcgctacttggaaaatggtgttggaggatgagggttgaaaagagtagtttgtggtata 8754089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 14168309 - 14168273
Alignment:
186 tttgataaatgttaaaaatggggctggagtgggaggt 222  Q
    ||||||||||||||||||||||||||| |||||||||    
14168309 tttgataaatgttaaaaatggggctggtgtgggaggt 14168273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 27 - 241
Target Start/End: Complemental strand, 17914351 - 17914137
Alignment:
27 gaggatttgggaatttaatttagctttacttggtaaatggtgttggcggatgcgggttgaaaatagaagtttgtggtatagtattttatctgctagatac 126  Q
    ||||||| |||| |||||||| || ||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||  ||||| | | ||||||     
17914351 gaggattcgggagtttaatttcgcattacttggtaaatggtgttggcgtatgtgggttgaaaataggagtttgtggtatagagttttaacaggtagatat 17914252  T
127 ggtgaggtaggaggtaaaattgtcgaggatgggcggtttaactctatttggtggaatattttgataaatgttaaaaatggggctggagtgggaggtggga 226  Q
    || ||||||||||||| ||| || ||||| ||||||||||| ||| |||||||||||| ||| |||||| | |||||||||||||| ||||||||||||     
17914251 ggggaggtaggaggtataatcgtagaggaggggcggtttaattctgtttggtggaataatttaataaatataaaaaatggggctggtgtgggaggtgggc 17914152  T
227 gttggtttgatgata 241  Q
    | |||||||||||||    
17914151 ggtggtttgatgata 17914137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 26 - 242
Target Start/End: Original strand, 15028937 - 15029153
Alignment:
26 agaggatttgggaatttaatttagctttacttggtaaatggtgttggcggatgcgggttgaaaatagaagtttgtggtatagtattttatctgctagata 125  Q
    |||||||| | || |||||||| |||||||||||| ||||||||||||  ||||||||||||||||| ||||||||||||||  ||||| | | ||||||    
15028937 agaggattcgagagtttaatttggctttacttggtgaatggtgttggcatatgcgggttgaaaataggagtttgtggtatagagttttagcaggtagata 15029036  T
126 cggtgaggtaggaggtaaaattgtcgaggatgggcggtttaactctatttggtggaatattttgataaatgttaaaaatggggctggagtgggaggtggg 225  Q
     || ||||||||||||  ||| |  ||||| ||||||||||||||| ||||||||||||  || |||||| | |||||||||||||  ||||||||||||    
15029037 tggggaggtaggaggtctaatcgcagaggaggggcggtttaactctgtttggtggaataaattaataaatataaaaaatggggctgatgtgggaggtggg 15029136  T
226 agttggtttgatgatat 242  Q
       ||||||||||||||    
15029137 tagtggtttgatgatat 15029153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 9e-48; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 27 - 224
Target Start/End: Complemental strand, 17195113 - 17194914
Alignment:
27 gaggatttgggaatttaatttagctttacttggtaaatggtgttggcggatgcgggttgaaaatagaagtttgtggtatagtattttatctgctagatac 126  Q
    ||||||| ||||||||||||| ||||||||||||||||||  |||||| ||||||||||| ||||| ||||||||||||||  ||||||  || ||||||    
17195113 gaggattagggaatttaatttggctttacttggtaaatggatttggcgaatgcgggttgagaataggagtttgtggtatagagttttattagccagatac 17195014  T
127 ggtgaggta--ggaggtaaaattgtcgaggatgggcggtttaactctatttggtggaatattttgataaatgttaaaaatggggctggagtgggaggtgg 224  Q
     | ||||||  ||||| |||||||  ||||| ||| ||||||||||| |||||||||||| ||||||||||||| ||||||||||||| |||||||||||    
17195013 agcgaggtataggagggaaaattgctgaggaggggaggtttaactctgtttggtggaataatttgataaatgttcaaaatggggctggtgtgggaggtgg 17194914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 35 - 219
Target Start/End: Original strand, 38141102 - 38141286
Alignment:
35 gggaatttaatttagctttacttggtaaatggtgttggcggatgcgggttgaaaatagaagtttgtggtatagtattttatctgctagatacggtgaggt 134  Q
    |||| |||||||| || ||||||| ||||||||||||| ||||  ||||||||||||| ||||||||||||||  ||||| |  |  ||||||| |||||    
38141102 gggagtttaatttggcgttacttgttaaatggtgttggaggattagggttgaaaataggagtttgtggtatagagttttagcatcacgatacggggaggt 38141201  T
135 aggaggtaaaattgtcgaggatgggcggtttaactctatttggtggaatattttgataaatgttaaaaatggggctggagtggga 219  Q
    |||||| | ||| |  ||||| ||||| ||||||||| |||||||||||| |||||| ||| |||||||||||||||| ||||||    
38141202 aggaggaataatcgatgaggaggggcgatttaactctgtttggtggaataatttgattaatattaaaaatggggctggtgtggga 38141286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 35 - 238
Target Start/End: Original strand, 5554622 - 5554825
Alignment:
35 gggaatttaatttagctttacttggtaaatggtgttggcggatgcgggttgaaaatagaagtttgtggtatagtattttatctgctagatacggtgaggt 134  Q
    |||| |||||||| || ||||||| ||||||||||||| ||||  ||||||||||||| |||||| |||||||  ||||| |  |  ||||| | |||||    
5554622 gggagtttaatttggcgttacttgttaaatggtgttggaggattagggttgaaaataggagtttgcggtatagagttttagcatcacgatacagggaggt 5554721  T
135 aggaggtaaaattgtcgaggatgggcggtttaactctatttggtggaatattttgataaatgttaaaaatggggctggagtgggaggtgggagttggttt 234  Q
    |||||| | ||| |  ||||| ||||| ||||||||| |||||||||||| |||||| ||| |||||||||||||||| |||||| ||||  | ||||||    
5554722 aggaggaataatcgatgaggaggggcgatttaactctgtttggtggaataatttgattaatattaaaaatggggctggtgtgggaagtggtcggtggttt 5554821  T
235 gatg 238  Q
    ||||    
5554822 gatg 5554825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 35 - 238
Target Start/End: Original strand, 19323083 - 19323286
Alignment:
35 gggaatttaatttagctttacttggtaaatggtgttggcggatgcgggttgaaaatagaagtttgtggtatagtattttatctgctagatacggtgaggt 134  Q
    |||| |||||||| || ||||||| ||||||||||||| ||||  ||||||||||||| ||||||||||||||  ||||  |  |  ||||||| |||||    
19323083 gggagtttaatttggcgttacttgttaaatggtgttggaggattagggttgaaaataggagtttgtggtatagagttttcgcatcacgatacggggaggt 19323182  T
135 aggaggtaaaattgtcgaggatgggcggtttaactctatttggtggaatattttgataaatgttaaaaatggggctggagtgggaggtgggagttggttt 234  Q
    |||||| | ||| |  ||||| || || ||||||||| |||||||||||| |||||| ||| |||||||||||||||| |||||| ||||  | ||||||    
19323183 aggaggaataatcgatgaggagggacgatttaactctgtttggtggaataatttgattaatattaaaaatggggctggtgtgggaagtggttggtggttt 19323282  T
235 gatg 238  Q
    ||||    
19323283 gatg 19323286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 35 - 238
Target Start/End: Complemental strand, 29127094 - 29126891
Alignment:
35 gggaatttaatttagctttacttggtaaatggtgttggcggatgcgggttgaaaatagaagtttgtggtatagtattttatctgctagatacggtgaggt 134  Q
    |||| |||||||| || ||||||| ||||||||||||| ||||  ||||||||||||  ||||||||||||||  ||||| |  |  ||||||| |||||    
29127094 gggagtttaatttggcgttacttgttaaatggtgttggaggattagggttgaaaataagagtttgtggtatagagttttagcatcacgatacggggaggt 29126995  T
135 aggaggtaaaattgtcgaggatgggcggtttaactctatttggtggaatattttgataaatgttaaaaatggggctggagtgggaggtgggagttggttt 234  Q
    |||||| | ||| |  ||||| ||||  ||||||||| |||||||||||| |||||| ||| ||||||||| |||||| |||||| ||||  | ||||||    
29126994 aggaggaataatcgatgaggaggggcaatttaactctgtttggtggaataatttgattaatattaaaaatgaggctggtgtgggaagtggtcggtggttt 29126895  T
235 gatg 238  Q
    ||||    
29126894 gatg 29126891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 241
Target Start/End: Complemental strand, 25289743 - 25289623
Alignment:
120 tagatacggtgaggtaggaggtaaaattgtcgaggatgggcggtttaactctatttggtggaatattttgataaatgttaaaaatggggctggagtggga 219  Q
    |||||| || ||||||||||||| ||| |  ||||| || || ||||||||| ||| |||||||| |||  ||||| | |||||||||||||| ||||||    
25289743 tagatatggggaggtaggaggtataatcgcagaggagggacgatttaactctgtttagtggaataatttattaaatat-aaaaatggggctggtgtggga 25289645  T
220 ggtgggagttggtttgatgata 241  Q
    |||||| | |||||||||||||    
25289644 ggtgggtggtggtttgatgata 25289623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 241
Target Start/End: Complemental strand, 40859179 - 40859058
Alignment:
120 tagatacggtgaggtaggaggtaaaattgtcgaggatgggcggtttaactctatttggtggaatattttgataaatgttaaaaatggggctggagtggga 219  Q
    |||||| || ||||||||||||| ||| |  ||||| || |||||||| ||| ||||||| |||| ||| |||||| | |||||||| ||||| ||||||    
40859179 tagatatggggaggtaggaggtataatcgcagaggagggacggtttaattctgtttggtgaaataatttaataaatataaaaaatggtgctggtgtggga 40859080  T
220 ggtgggagttggtttgatgata 241  Q
    |||||  | |||||||||||||    
40859079 ggtggacggtggtttgatgata 40859058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 28507048 - 28507010
Alignment:
37 gaatttaatttagctttacttggtaaatggtgttggcgg 75  Q
    |||||||||||||||||| |||| |||||||||||||||    
28507048 gaatttaatttagctttaattggcaaatggtgttggcgg 28507010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 106
Target Start/End: Original strand, 19293613 - 19293658
Alignment:
61 aaatggtgttggcggatgcgggttgaaaatagaagtttgtggtata 106  Q
    |||||||||||| ||||| |||||||||| || |||||||||||||    
19293613 aaatggtgttggaggatgagggttgaaaagagtagtttgtggtata 19293658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 27 - 241
Target Start/End: Complemental strand, 26370184 - 26369970
Alignment:
27 gaggatttgggaatttaatttagctttacttggtaaatggtgttggcggatgcgggttgaaaatagaagtttgtggtatagtattttatctgctagatac 126  Q
    ||||||| |||| ||||| || || ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||  ||||| | | || |||     
26370184 gaggattcgggagtttaacttggcattacttggtaaatggtgttggcgtatgcgggttgaaaataggagtttgtggtatagagttttagcaggtaaatat 26370085  T
127 ggtgaggtaggaggtaaaattgtcgaggatgggcggtttaactctatttggtggaatattttgataaatgttaaaaatggggctggagtgggaggtggga 226  Q
    || ||||||||||||| ||| |  ||||||||||| ||||| | | |||||||||||| ||| |||||| | |||||||||||||| ||||||||||||     
26370084 ggggaggtaggaggtataatcgcagaggatgggcgatttaattttgtttggtggaataatttaataaatataaaaaatggggctggtgtgggaggtgggc 26369985  T
227 gttggtttgatgata 241  Q
    | |||||||||||||    
26369984 ggtggtttgatgata 26369970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 38 - 238
Target Start/End: Original strand, 7965 - 8165
Alignment:
38 aatttaatttagctttacttggtaaatggtgttggcggatgcgggttgaaaatagaagtttgtggtatagtattttatctgctagatacggtgaggtagg 137  Q
    |||||||||| || ||||||| ||||||||||||| ||||| ||||||||||||| ||||||||||||||  ||||| |  |  ||||| | ||||||||    
7965 aatttaatttggcgttacttgttaaatggtgttggaggatgagggttgaaaataggagtttgtggtatagagttttagcaacacgatacagggaggtagg 8064  T
138 aggtaaaattgtcgaggatgggcggtttaactctatttggtggaatattttgataaatgttaaaaatggggctggagtgggaggtgggagttggtttgat 237  Q
    ||| | ||| |  ||||| ||||||||||||||| |||||||||||| ||| || ||| || ||||||||||||| |||||| ||||  | |||||||||    
8065 aggaataatcgctgaggaggggcggtttaactctgtttggtggaataatttaattaatatttaaaatggggctggtgtgggaagtggtcggtggtttgat 8164  T
238 g 238  Q
    |    
8165 g 8165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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