View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2603_low_24 (Length: 249)
Name: NF2603_low_24
Description: NF2603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2603_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 8763020 - 8763256
Alignment:
| Q |
1 |
atattcatgatctccagaattttctttggaacagcctctgaattagggaaaatataaacacaagaaaaacacattgtaaaactgattagaattaaaaagc |
100 |
Q |
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| T |
8763020 |
atattcatgatctccagaattttctttggaacagcctctgaattagggaaaatataaacacaagaaaaacacattgtaaaactaattagatttaaaaagc |
8763119 |
T |
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| Q |
101 |
ctttcataagaaaaatatttttaaaagatgacttactttccaatccaatttggttaacagcaagcagaaacattttgtggagataaggtgtccaaacaag |
200 |
Q |
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| T |
8763120 |
ctttcataagaaaaatatttttaaaagatgacttactttccaatccaatttggttaacagcaagcagaaacattttgtggagataaggtgtccaaacaag |
8763219 |
T |
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| Q |
201 |
tttttgtttcttaacaacttgaatatctttctctcct |
237 |
Q |
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| T |
8763220 |
tttttgtttcttaacaacttgaatatctttctctcct |
8763256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 8789499 - 8789577
Alignment:
| Q |
1 |
atattcatgatctccagaattttctttggaacagcctctgaattagggaaaatataaacacaagaaaaacacattgtaa |
79 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8789499 |
atattcatgatctccagaattttctttggaacagcctctgaattagggaaaatataaacacaagaaaaacacattgtaa |
8789577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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