View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2603_low_29 (Length: 236)
Name: NF2603_low_29
Description: NF2603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2603_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 8762671 - 8762451
Alignment:
| Q |
1 |
aacttcttgcgccaacacttcaatatttgcaaacactggcatatcaaacaagaggtgtaaacaatgtttttaacaatttcaaccaatttccaacacatca |
100 |
Q |
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| T |
8762671 |
aacttcttgcgccaacacttcaatatttgcaaacactggcatatcaaacaagaggtgtaaacaatgtttttaacaatttcaaccaatttccaacacatca |
8762572 |
T |
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| Q |
101 |
tgttgaccaattcccttacatacaaaaagggttggctcttcaagatttggaacaagttaggcttggaaaatcgaagttggaagccaatgctgttgcggag |
200 |
Q |
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| T |
8762571 |
tgttgaccaattcccttacatacaaaaagggttggctcttcaagatttggaacaagttaggcttggaaaatcaaagttggaagccaatgctgttgtggag |
8762472 |
T |
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| Q |
201 |
aataatgggcatggtcaaaac |
221 |
Q |
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|||| ||| |||| ||||||| |
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| T |
8762471 |
aatagtggccatgatcaaaac |
8762451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 8789137 - 8789054
Alignment:
| Q |
21 |
caatatttgcaaacactggcatatcaaacaagaggtgtaaacaatgtttttaacaatttcaaccaatttccaacacatcatgtt |
104 |
Q |
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| T |
8789137 |
caatgtttgcatacactggcatatcaaacaagaggtacaaacaatgtttttaaccattttaaccaatttccaacacatcatgtt |
8789054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 153 - 221
Target Start/End: Complemental strand, 8789050 - 8788982
Alignment:
| Q |
153 |
caagttaggcttggaaaatcgaagttggaagccaatgctgttgcggagaataatgggcatggtcaaaac |
221 |
Q |
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| T |
8789050 |
caagttaggcttgtaaaatcaaagttggaagccgatgttgttgcggagaataatggccatggtcaaaac |
8788982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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