View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2603_low_3 (Length: 599)
Name: NF2603_low_3
Description: NF2603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2603_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 572; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 1 - 580
Target Start/End: Complemental strand, 53043327 - 53042748
Alignment:
| Q |
1 |
actgttttacgcggaagaggagcaaagccaccaaacaaaccccagaattctccagattcagagtcagccatcaaccttccatcctcttcatggaaattca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53043327 |
actgttttacgcggaagaggagcaaagccaccaaacaaaccccagaattctccagattcagagtcagccatcaaccttccatcctcttcatggaaattca |
53043228 |
T |
|
| Q |
101 |
aatgtaaacatccgatacacaacaatgacctttagaacatccaaatataatagtaaacttaccaatagaagccacttcacatttcccatcatggtaggta |
200 |
Q |
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| T |
53043227 |
aatgtaaacatccgatacacaacaatgacctttagaacatccaaatataatagtaaacttaccaatagaagccacttcacatttcccatcatggtaggta |
53043128 |
T |
|
| Q |
201 |
tccttaatatattgaacaacttccaatgctttagccctttcttgaatagatgaattggaaccattaaattggaagatttttgactcagtatccagaataa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
53043127 |
tccttaatatattgaacaacttccaatgctttagccctttcttgaatagatgaattggaaccattaaattggaagatttttgactcagtatcaagaataa |
53043028 |
T |
|
| Q |
301 |
aaatatcatcatggttgagtgaagatcgagcaaaaggaacctataaccaatataaatatttaatcaaaaggtagaaactagcgtttatatatgtgtgatt |
400 |
Q |
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| T |
53043027 |
aaatatcatcatggttgagtgaagatcgagcaaaaggaacctataaccaatataaatatttaatcaaaaggtagaaactagcgtttatatatgtgtgatt |
53042928 |
T |
|
| Q |
401 |
gtctatactaataatgtgcaagtctcaaaccttaatgaatcaataacaggggaataatatcaaacttgcctctttgacatacacaacatgtttccctttg |
500 |
Q |
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| T |
53042927 |
gtctatactaataatgtgcaagtctcaaacctcaatgaatcaataacaggggaataatatcaaacttgcctctttgacatacacaacatgtttccctttg |
53042828 |
T |
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| Q |
501 |
cagacaaacaaccgtgtcttatgttcttcagcttcaacatgcttaaaaccagaggcagctccaccttcttgtggtataat |
580 |
Q |
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| T |
53042827 |
cagacaaacaaccgtgtcttatgttcttcagcttcaacatgcttaaaaccagaggcagctccaccttcttgtggtataat |
53042748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 127; Significance: 3e-65; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 157 - 347
Target Start/End: Original strand, 15964715 - 15964905
Alignment:
| Q |
157 |
acttaccaatagaagccacttcacatttcccatcatggtaggtatccttaatatattgaacaacttccaatgctttagccctttcttgaatagatgaatt |
256 |
Q |
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| T |
15964715 |
acttaccaatagcagctatctcgcatttcccctcatggtaggtatccttaatatactgtacaacctccaaagctttagctctttcttgaatagatgaatt |
15964814 |
T |
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| Q |
257 |
ggaaccattaaattggaagatttttgactcagtatccagaataaaaatatcatcatggttgagtgaagatcgagcaaaaggaacctataac |
347 |
Q |
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| T |
15964815 |
ggaaccattaaattggaagatttttgactcggtgtcaagaacaaaaatatcatcatggtttagtgaagatcgagcaaaaggaacctataac |
15964905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 462 - 580
Target Start/End: Original strand, 15965023 - 15965141
Alignment:
| Q |
462 |
aaacttgcctctttgacatacacaacatgtttccctttgcagacaaacaaccgtgtcttatgttcttcagcttcaacatgcttaaaaccagaggcagctc |
561 |
Q |
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||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||| |||| |||||| || |||| ||||||||||| ||| ||| |
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| T |
15965023 |
aaacttgcctctttgacatgtacaacatgtttccctctgcatacaaacaaccgtgtcttgtgtttttcagcctcggcatgtttaaaaccagaagcaactc |
15965122 |
T |
|
| Q |
562 |
caccttcttgtggtataat |
580 |
Q |
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|||||||||| |||||||| |
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| T |
15965123 |
caccttcttgaggtataat |
15965141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 15964567 - 15964655
Alignment:
| Q |
13 |
ggaagaggagcaaagccaccaaacaaaccccagaattctccagattcagagtcagccatcaaccttccatcctcttcatggaaattcaa |
101 |
Q |
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|||||||||||||| || ||||| |||||||||||||| |||| ||||| |||||||| ||| ||||||||||| | ||||| ||||| |
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| T |
15964567 |
ggaagaggagcaaatccgccaaagaaaccccagaattccccagtttcaggatcagccattaactttccatcctctgcttggaagttcaa |
15964655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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