View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2603_low_30 (Length: 232)
Name: NF2603_low_30
Description: NF2603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2603_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 13 - 212
Target Start/End: Original strand, 35631625 - 35631824
Alignment:
| Q |
13 |
ggaggaacatgacgcatgcatgacaatacgtgagtagtgaaggaatcaaggtttttgtttttgccttcatcttggtcttgttacgtttcttaaaattttg |
112 |
Q |
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| T |
35631625 |
ggaggaacatgacgcatgcatgacaacacgtgagtagtgaaggaatcaaggtttttgtttttgccttcatcttggtcttgttacgtttcttaaaattttg |
35631724 |
T |
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| Q |
113 |
taatgttgttcttttataagtaaaaattgaaacannnnnnnggtctcatcctaattaagattgattaaatggttgagaaatgaccagctacgtgatagtg |
212 |
Q |
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| T |
35631725 |
taatgttgttcttttataagtaaaaattgaaacatttttttggtctcatcctaattaagattgattaagtggttgagaaatgaccagctacgtgatagtg |
35631824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 146
Target Start/End: Original strand, 35636460 - 35636503
Alignment:
| Q |
103 |
taaaattttgtaatgttgttcttttataagtaaaaattgaaaca |
146 |
Q |
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| T |
35636460 |
taaaattttgtaatgatgttcaattataagtaaaaattgaaaca |
35636503 |
T |
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