View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2603_low_6 (Length: 472)
Name: NF2603_low_6
Description: NF2603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2603_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 442; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Original strand, 40136736 - 40137201
Alignment:
| Q |
1 |
tgctttcattcattagaatgatttgaaacatatgaattttccagcttcaatacagaatcccttctttgtgcgaaacgcacttgattcatagccttggatc |
100 |
Q |
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| T |
40136736 |
tgctttctatcattagaatgatttgaaacatatgaattttccagcttcaatacagaatcccttctttgtgtgaaacgcacttgattcatagccttggatc |
40136835 |
T |
|
| Q |
101 |
ctttattctggtagtggtatatcagctaaatcttctctataaggaacatggctcaactctaattgaccattatccacaattcctttttccacttggtttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40136836 |
ctttattctggtagtggtatatcagctaaatcttctctataaggaacatggctcaactctagttgaccattatccacaattcctttttccacttggtttt |
40136935 |
T |
|
| Q |
201 |
gcattactgtatcatttttcgtctcgatgaacatctcaacattgtcttttctgaaggtaaggtagataactgaggcaatataaattgccattagaggaaa |
300 |
Q |
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| T |
40136936 |
gcattactgtatcatttttcgtctcgatgaacatctcaacagtgtcttttctgaaggtaaggtagataactgaggcaatataaattgccattagaggaaa |
40137035 |
T |
|
| Q |
301 |
cactataatcccaatgaacacatttgccacctttggtagactactatgtattatccacttcacaaaggcagtactgaggtagtacacattgatactaatg |
400 |
Q |
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| T |
40137036 |
cactataatcccaatgaacacatttgccacctttggtagactactatgtattatccacttcacaaaggcagtactgaggtagtacacattgatactaatg |
40137135 |
T |
|
| Q |
401 |
attccaaaacctagtatccatgagattgtaatgatctgcaaataaatcgtgtcacattttcttcga |
466 |
Q |
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| T |
40137136 |
attccaaaacctagtatccatgagattgtaatgatctgcaaataaatcgtgtcacatttttttcga |
40137201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 237 - 460
Target Start/End: Original strand, 40124868 - 40125091
Alignment:
| Q |
237 |
caacattgtcttttctgaaggtaaggtagataactgaggcaatataaattgccattagaggaaacactataatcccaatgaacacatttgccacctttgg |
336 |
Q |
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||||| ||||||||||||| || || |||||||||||| | ||||| | |||||||||||| |||||||| | ||||||||||||||||||||||||||| |
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| T |
40124868 |
caacagtgtcttttctgaatgttagatagataactgagacgatatacagtgccattagagggaacactatgagcccaatgaacacatttgccacctttgg |
40124967 |
T |
|
| Q |
337 |
tagactactatgtattatccacttcacaaaggcagtactgaggtagtacacattgatactaatgattccaaaacctagtatccatgagattgtaatgatc |
436 |
Q |
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| T |
40124968 |
tagactgttgtgaataatccaacccacaaaagcagtaatgaggtagtacacattgattccaatgattcccaaacccagtatccatgagatgataatgatc |
40125067 |
T |
|
| Q |
437 |
tgcaaataaatcgtgtcacatttt |
460 |
Q |
| |
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|||| |||| ||||||||||| |
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| T |
40125068 |
tgcaccaaaattatgtcacatttt |
40125091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 119 - 440
Target Start/End: Original strand, 40124750 - 40125071
Alignment:
| Q |
119 |
atatcagctaaatcttctctataaggaacatggctcaactctaattgaccattatccacaattcctttttccacttggttttgcattactgtatcatttt |
218 |
Q |
| |
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||||||||||||||||||||||||||| || ||||||||||| ||||||| | |||| || |||||||| ||| |||||||| | |||| | |
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| T |
40124750 |
atatcagctaaatcttctctataaggagtataactcaactctaactgaccatcgtttacaaaccccttttccacatgggtttgcattgacgggtcatcct |
40124849 |
T |
|
| Q |
219 |
tcgtctcgatgaacatctcaacattgtcttttctgaaggtaaggtagataactgaggcaatataaattgccattagaggaaacactataatcccaatgaa |
318 |
Q |
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| ||| | ||| | ||||| ||||||||||||| || || |||||||||||| | ||||| | |||||||||||| |||||||| | ||||||||| |
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| T |
40124850 |
taacctccacaaacgttacaacagtgtcttttctgaatgttagatagataactgagacgatatacagtgccattagagggaacactatgagcccaatgaa |
40124949 |
T |
|
| Q |
319 |
cacatttgccacctttggtagactactatgtattatccacttcacaaaggcagtactgaggtagtacacattgatactaatgattccaaaacctagtatc |
418 |
Q |
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|||||||||||||||||||||||| | || || ||||| |||||| |||||| ||||||||||||||||||| | ||||||||| ||||| |||||| |
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| T |
40124950 |
cacatttgccacctttggtagactgttgtgaataatccaacccacaaaagcagtaatgaggtagtacacattgattccaatgattcccaaacccagtatc |
40125049 |
T |
|
| Q |
419 |
catgagattgtaatgatctgca |
440 |
Q |
| |
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|||||||| |||||||||||| |
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|
| T |
40125050 |
catgagatgataatgatctgca |
40125071 |
T |
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