View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2603_low_7 (Length: 424)
Name: NF2603_low_7
Description: NF2603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2603_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 11 - 409
Target Start/End: Original strand, 46138401 - 46138799
Alignment:
| Q |
11 |
atgagatcacgaacttcagccccatgacaacctcctgctgtaaaactcctcaccaccaccacacccttatcttccatcactcttgccaatgccatctgat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46138401 |
atgagatcacgaacttcagccccatgacaacctcctgctgtaaaactcctcaccaccaccacacccttatcttccatcactcttgccaatgccatctgat |
46138500 |
T |
|
| Q |
111 |
gatctatcaatggatccccttcacacccactcaccaacaccctccaaccaagcttcctcaccctatccaaaactccaacacaatccccaaccgttggatt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
46138501 |
gatctatcaatggatccccttcacacccactcaccaacaccctccaaccaagcttcctcaccctatccaaaactccaacgcaatccccaaccgttggatt |
46138600 |
T |
|
| Q |
211 |
acaatactcatgatcacggtcaactccaaccggcaacgctagttcccacatcaagtcacacacatgaggtggcaaaacgggatcatttaacagcctcgac |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46138601 |
acaatactcatgatcacggtcaactccaaccggcaacgctagttcccacatcaagtcacacacatgaggtggcaaaacgggatcatttaacagcctcgac |
46138700 |
T |
|
| Q |
311 |
tccgatgccaccctattggtcccaccaaaaaacggttgggacaatataaaccctcttatcttaatagccttgagatactcatgattaagattagtctct |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
46138701 |
tccgatgccaccctattggtcccaccaaaaaacggttgggacaatataaaccctcttatcttaatagccttcagatactcatgattaagattagtctct |
46138799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 46140505 - 46140542
Alignment:
| Q |
200 |
accgttggattacaatactcatgatcacggtcaactcc |
237 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
46140505 |
accgttggattacaatactcataatcacgatcaactcc |
46140542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 22339320 - 22339267
Alignment:
| Q |
187 |
aacacaatccccaaccgttggattacaatactcatgatcacggtcaactccaac |
240 |
Q |
| |
|
||||| ||| || |||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
22339320 |
aacactatctcccaccgttggattacaatactcataatcacggttaactccaac |
22339267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 22416026 - 22415984
Alignment:
| Q |
197 |
ccaaccgttggattacaatactcatgatcacggtcaactccaa |
239 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||| |||||||||| |
|
|
| T |
22416026 |
ccaaccgttggattgcaatactcatgattacgatcaactccaa |
22415984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University