View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2603_low_9 (Length: 416)
Name: NF2603_low_9
Description: NF2603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2603_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 19 - 412
Target Start/End: Original strand, 39168330 - 39168723
Alignment:
| Q |
19 |
acttcatttattttgataaatggagaggatcatttctcaataaaaatgtgatatatcagttactaaaagcggaatggagcaaatgatttcttaatatgct |
118 |
Q |
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| T |
39168330 |
acttcatttattttgttaaatggagaggatcatttctcaataaaaatgtgatatatcagttactaaaagcggaatggagcaaatgatttcttaatatgct |
39168429 |
T |
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| Q |
119 |
tagaaatacccccaatctgttccaataaggatatttgatgaatccatttctgagttatgcggggaaacggggagaaagaaatgcttcggagggaggacga |
218 |
Q |
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| T |
39168430 |
tagaaatacccccaatctgttccaataaggatatttgatgaatccatttctgagttatgcggggaaacggggagaaagaaatgcttcggagggaggacga |
39168529 |
T |
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| Q |
219 |
cagcaaggaaaatggaacgtgagtttcaaataaaaaacctaggaaaatgtttgtctagatgttttgtgtccacatatacacgtggcgttactatagactt |
318 |
Q |
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| T |
39168530 |
cagcaaggaaaatggaacgtgagtttcaaataaaagacctaggaaaatgtttgtctagatgttttgtgtccacatatacacgtggcgttactatagactt |
39168629 |
T |
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| Q |
319 |
tgactttttaggtcaaaatagactctaactcaattactcatacattggtccttcaagtttaaattaaactgggtcatccatcatgatgatgtcc |
412 |
Q |
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| T |
39168630 |
tgactttttaggtcaaaatagactctaactcaattactcatatattggtccttcaagtttaaattaaactgggtcatccatcatgatgaggtcc |
39168723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 11864949 - 11864981
Alignment:
| Q |
17 |
aaacttcatttattttgataaatggagaggatc |
49 |
Q |
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| T |
11864949 |
aaactccatttattttgataaatggagaggatc |
11864981 |
T |
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