View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2604_high_1 (Length: 705)
Name: NF2604_high_1
Description: NF2604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2604_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 620; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 1 - 689
Target Start/End: Original strand, 31009355 - 31010043
Alignment:
| Q |
1 |
tgcttttctctgtttcatttctcatttaccattgcatgatgctccttatatacactcgtcgtaggcttgaatctgtcgtagggttccccaaaataaattc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
31009355 |
tgcttttctctgtttcatttctcatttaccactgcatgatgctccttatatacactcgtcgtaggcttgaatccgtcgtagggttccccaaaataaattc |
31009454 |
T |
|
| Q |
101 |
ttttggtgatttaggctatgcaacaagtggccattttggaagattgtgcgttgatattatggtttttcttatgcaatgtggtttttgtgttagctacctt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31009455 |
ttttggtgatttaggctatgcaacaagtggccattttggaagattgtgcgttgatatcatggtttttcttatgcaatgtggtttttgtgttagctacctt |
31009554 |
T |
|
| Q |
201 |
atttttatttccactactttgatacatcttagtcataatacaaactcatcatctttattgggtttttcaccaaaggnnnnnnnnatttgggcttgtttcc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31009555 |
atttttatttccactactttgatacatcttagtcacaatacaaactcatcatctttattgggtttttcaccaaaggttttttttatttgggcttgtttcc |
31009654 |
T |
|
| Q |
301 |
cttttcaattgggtttgaatgcaattccaagtttgacacatttggctcctttgagtatatttgctgatgttgttgatcttggagctatgggagttgtaat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31009655 |
cttttcaattgggtttgaatgcaattccaagtttgacacatttggctcctttgagtatatttgctgatgttgttgatcttggagctatgggagttgtaat |
31009754 |
T |
|
| Q |
401 |
ggttgaggatgtttttgtctttttggaaaataggccacctttgaagacttttggtggtttatctgnnnnnnnatatggtttaggtgtggctgtttattct |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
31009755 |
ggttgaggatgtttttgtctttttggaaaataggccacctttgaagacttttggtggtttatctgtttttctatatggtttaggtgtggctgtttattct |
31009854 |
T |
|
| Q |
501 |
tttgaaggaataggaatggttttgcctttggaatcagaagcaaaagataaagataaatttggtggagttttgggtttgggaatgtttctaatttttctgt |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
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|
| T |
31009855 |
tttgaaggaataggaatggttttgcctttggaatcagaagcaaaagataaagataaatttggtggagttttgggtttgggaatgttcctaatttttctat |
31009954 |
T |
|
| Q |
601 |
tgtatggaggttttgctactttaggttactttgcttttggtgaagcaactcaagggattattactacaaatctagggcaaggaatgatt |
689 |
Q |
| |
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|
| T |
31009955 |
tgtatggaggttttgctactttaggttactttgcttttggtgaagcaactcaagggattattactacaaatctagggcaaggaatgatt |
31010043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 286 - 533
Target Start/End: Complemental strand, 9783041 - 9782794
Alignment:
| Q |
286 |
tttgggcttgtttcccttttcaattgggtttgaatgcaattccaagtttgacacatttggctcctttgagtatatttgctgatgttgttgatcttggagc |
385 |
Q |
| |
|
|||||| |||||| || |||||||| || |||||| | || || |||||| ||||| || ||||||||||| |||||||||||||||||| || || |
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|
| T |
9783041 |
tttggggttgttttccatttcaattagggttgaattcgatcaaaactttgacccatttagcccctttgagtatttttgctgatgttgttgatatttctgc |
9782942 |
T |
|
| Q |
386 |
tatgggagttgtaatggttgaggatgtttttgtctttttggaaaataggccacctttgaagacttttggtggtttatctgnnnnnnnatatggtttaggt |
485 |
Q |
| |
|
|| | | ||||| |||||||| ||||||||||| || || ||||||| ||| |||| | ||||| ||||| || |||||| | ||| |
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| T |
9782941 |
taagagtgttgttatggttgaagatgtttttgttttcatgcaaaatagaccaaatttggaagcttttaagggttttggtgtttttttctatggtattggt |
9782842 |
T |
|
| Q |
486 |
gtggctgtttattcttttgaaggaataggaatggttttgcctttggaa |
533 |
Q |
| |
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|| ||||||||| |||||||||| || ||||||||||||||||||||| |
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|
| T |
9782841 |
gtagctgtttatgcttttgaagggattggaatggttttgcctttggaa |
9782794 |
T |
|
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