View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2604_high_11 (Length: 468)
Name: NF2604_high_11
Description: NF2604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2604_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 88; Significance: 4e-42; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 181 - 284
Target Start/End: Original strand, 49032768 - 49032871
Alignment:
| Q |
181 |
acacacataaatcatttttatattagggtatttttgtcatttactatttatatctctttctttcctcttcactttcatccctaccaaacaactaaacaat |
280 |
Q |
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| T |
49032768 |
acacacacaaatcacttttatattagggtatttttgtcatttactatttatatatctttctttcctcttcactttcacccctaccaaacaactaaacaat |
49032867 |
T |
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| Q |
281 |
catc |
284 |
Q |
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|||| |
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| T |
49032868 |
catc |
49032871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 49032624 - 49032685
Alignment:
| Q |
39 |
atatttcttttaacgtttgtgttcctttatttgaaataatctaatgtttgtatttcctttac |
100 |
Q |
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| T |
49032624 |
atatttcttttaacgtttgtgttcctttatttgaaataatccaatgtttgtatttcctttac |
49032685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 41055024 - 41055095
Alignment:
| Q |
32 |
gagatgaatatttc--ttttaacgtttgtgttccttt-atttgaaataatctaatgtttgtatttcctttac |
100 |
Q |
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| T |
41055024 |
gagataaatatttcatttttaacgtttgtgttttttttatttgaaataatctaacgtttttacttcctttac |
41055095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 42640489 - 42640418
Alignment:
| Q |
32 |
gagatgaatatttc--ttttaacgtttgtgttccttt-atttgaaataatctaatgtttgtatttcctttac |
100 |
Q |
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| T |
42640489 |
gagataaatatttcatttttaacgtttgtgtttcttttatttgaaataatctaacgtttttacttcctttac |
42640418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 419
Target Start/End: Complemental strand, 43849880 - 43849846
Alignment:
| Q |
385 |
agttggcatagtcaatggtgttcgagtcgttgttc |
419 |
Q |
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| T |
43849880 |
agttgacatagtcaatggtgttcgagtcgttgttc |
43849846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 30514632 - 30514673
Alignment:
| Q |
205 |
agggtatttttgtcatttactatttatatctctttctttcct |
246 |
Q |
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| T |
30514632 |
agggtatttttgtcatttactaaatatatatctttctttcct |
30514673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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