View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2604_high_16 (Length: 415)
Name: NF2604_high_16
Description: NF2604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2604_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 19 - 408
Target Start/End: Original strand, 32765194 - 32765583
Alignment:
| Q |
19 |
caaagtagaggtgatatctttcatgataaagaagtgtttcactactactttcaaagttacatctgtcttctccctagatatgcggtgcctagatgtttga |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32765194 |
caaagtagaggtgatatctttcatgataaagaagtgtttcactactactttcaaaattacatctgtcttctccctagatatgcggcgcctagatgtttga |
32765293 |
T |
|
| Q |
119 |
tcaatttcactccagaaagcagagaaactgtaaatgttgcaaataactgtttgatcaacttataaaatcagacacccgcaatttgaaggtctgacaatgg |
218 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32765294 |
tcaattttactccagaaagcagagaaactgtaaatgttgcaaataactgtttgatcaacttataaaatcagacacccacaatttgaaggtctgacaatgg |
32765393 |
T |
|
| Q |
219 |
atactattacattattctaattaattaaatcaggaaacagtgtcgttgtaataaataagaaatggcattatgaaaatcagatttagtttcaaaactaggc |
318 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32765394 |
atactattacattatattaattaattaaatcaggaaacagtgtcgttgtaataaataagaaatggcattatgaaaatcagatttagtttcaaaactaggc |
32765493 |
T |
|
| Q |
319 |
acaaaccacgggtatttataatacatcaaaccatggtcaacaattagacgtattaatggaattcacccacttctgtatcttttcttctca |
408 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32765494 |
acaaaccatgggtatttataatacatcaaaccatggtcaacaattagacgtattaatggaattcacccacttctgtatcttttcttctca |
32765583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 19 - 312
Target Start/End: Original strand, 32754496 - 32754800
Alignment:
| Q |
19 |
caaagtagaggtgatatctttcatgataaagaagtgtttcactactactttcaaagttacatctgtcttctccctagatatgcggtgcctagatgtttga |
118 |
Q |
| |
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||||||||| |||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
32754496 |
caaagtagaagtgacttctttctcaataaagaagtgtttcactactactttcaaaattacatctgtcttctccctagacatgcggcgcctagatgtttga |
32754595 |
T |
|
| Q |
119 |
tcaatttcactccagaaagcagagaaactgtaaatgttgcaaataactgtttgatcaacttataaaatcagacacccgcaatttgaaggtc--------- |
209 |
Q |
| |
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|||| ||| | |||||||||| |||||||| |||| ||||| || |||||||||||| ||||||||||||||||||| ||| || |||||| |
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| T |
32754596 |
tcaacttccccccagaaagcaaagaaactgcaaatattgcacattactgtttgatcagcttataaaatcagacacccacaacttaaaggtctggcacaag |
32754695 |
T |
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| Q |
210 |
tgacaatggatactattacattattctaattaattaaatcagg--aaacagtgtcgttgtaataaataagaaatggcattatgaaaatcagatttagttt |
307 |
Q |
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|| ||||||||||||| ||||| | || ||||||||||| | ||| |||||| ||| |||||||| ||||||||| ||| ||||||| ||||| ||| |
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| T |
32754696 |
tggcaatggatactatcacattttattagttaattaaatcgagaaaaaaagtgtcattgcaataaatacgaaatggcaatataaaaatcaaatttaattt |
32754795 |
T |
|
| Q |
308 |
caaaa |
312 |
Q |
| |
|
|||| |
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|
| T |
32754796 |
aaaaa |
32754800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 16776320 - 16776213
Alignment:
| Q |
19 |
caaagtagaggtgatatctttcatgataaagaagtgtttcactactactttcaaagttacatctgtcttctccctagatatgcggtgcctagatgtttga |
118 |
Q |
| |
|
|||||||||||| | |||||| |||||||||||||| ||||||||||||||| |||||||||| || |||||||| |||||| ||||||| ||||| |
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|
| T |
16776320 |
caaagtagaggtcacttctttctctataaagaagtgttttactactactttcaaaattacatctgttttttccctagacatgcggcgcctagaagtttgg |
16776221 |
T |
|
| Q |
119 |
tcaatttc |
126 |
Q |
| |
|
|||||||| |
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|
| T |
16776220 |
tcaatttc |
16776213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 309 - 366
Target Start/End: Original strand, 32754829 - 32754886
Alignment:
| Q |
309 |
aaaactaggcacaaaccacgggtatttataatacatcaaaccatggtcaacaattaga |
366 |
Q |
| |
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||||||||||| |||| ||||||||||||||||||||| |||| |||||||||||| |
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|
| T |
32754829 |
aaaactaggcataaactgagggtatttataatacatcaaatcatgatcaacaattaga |
32754886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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