View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2604_high_2 (Length: 674)

Name: NF2604_high_2
Description: NF2604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2604_high_2
NF2604_high_2
[»] chr2 (16 HSPs)
chr2 (19-660)||(40879265-40879898)
chr2 (461-642)||(7586400-7586581)
chr2 (460-650)||(31205799-31205990)
chr2 (461-642)||(8854088-8854269)
chr2 (461-642)||(9073783-9073964)
chr2 (461-642)||(30820480-30820661)
chr2 (461-642)||(12856968-12857149)
chr2 (460-633)||(31186083-31186255)
chr2 (460-547)||(4278258-4278343)
chr2 (591-642)||(8853926-8853977)
chr2 (591-642)||(12856888-12856939)
chr2 (533-574)||(6333067-6333108)
chr2 (591-640)||(9073993-9074042)
chr2 (591-645)||(7586569-7586625)
chr2 (591-645)||(9073952-9074008)
chr2 (591-645)||(30820649-30820705)
[»] chr8 (7 HSPs)
chr8 (461-660)||(30530474-30530673)
chr8 (461-650)||(27359156-27359345)
chr8 (461-650)||(27368513-27368702)
chr8 (461-650)||(17743675-17743864)
chr8 (461-642)||(15055638-15055819)
chr8 (461-642)||(1956150-1956331)
chr8 (591-623)||(15055452-15055484)
[»] scaffold1240 (1 HSPs)
scaffold1240 (460-660)||(557-757)
[»] chr4 (23 HSPs)
chr4 (486-660)||(34435401-34435575)
chr4 (463-641)||(33606095-33606273)
chr4 (461-642)||(16172718-16172899)
chr4 (461-642)||(8993777-8993958)
chr4 (461-642)||(13112555-13112736)
chr4 (461-642)||(3616115-3616296)
chr4 (461-642)||(46915340-46915521)
chr4 (480-642)||(3531145-3531307)
chr4 (461-642)||(2213146-2213326)
chr4 (460-609)||(36657582-36657730)
chr4 (461-584)||(28446348-28446471)
chr4 (461-660)||(53182276-53182460)
chr4 (591-660)||(33606037-33606106)
chr4 (591-642)||(2213437-2213488)
chr4 (621-660)||(36657570-36657609)
chr4 (591-642)||(46915632-46915683)
chr4 (591-642)||(3531336-3531387)
chr4 (591-642)||(16173055-16173106)
chr4 (591-642)||(16173094-16173145)
chr4 (591-645)||(3531295-3531351)
chr4 (591-645)||(3531457-3531513)
chr4 (591-645)||(8993733-8993789)
chr4 (591-645)||(13112511-13112567)
[»] chr1 (25 HSPs)
chr1 (460-660)||(33166278-33166478)
chr1 (460-660)||(47298395-47298595)
chr1 (460-660)||(38837535-38837732)
chr1 (460-660)||(17785337-17785537)
chr1 (460-660)||(17677157-17677358)
chr1 (461-633)||(51522343-51522515)
chr1 (461-648)||(8470333-8470520)
chr1 (461-642)||(48406419-48406600)
chr1 (461-642)||(48386046-48386227)
chr1 (460-631)||(18318635-18318805)
chr1 (461-642)||(2475990-2476171)
chr1 (461-642)||(31470277-31470458)
chr1 (461-642)||(45241129-45241310)
chr1 (591-642)||(8470261-8470312)
chr1 (591-648)||(8470294-8470351)
chr1 (591-642)||(31469996-31470047)
chr1 (591-642)||(31470158-31470209)
chr1 (591-642)||(31470197-31470248)
chr1 (250-297)||(40037027-40037074)
chr1 (605-650)||(51522304-51522349)
chr1 (591-645)||(31470114-31470170)
chr1 (591-645)||(31470233-31470289)
chr1 (591-645)||(45241085-45241141)
chr1 (591-645)||(48386215-48386271)
chr1 (591-645)||(48386256-48386312)
[»] chr3 (39 HSPs)
chr3 (461-660)||(33750654-33750855)
chr3 (460-659)||(50019091-50019290)
chr3 (460-660)||(26157948-26158148)
chr3 (461-642)||(30416327-30416508)
chr3 (461-642)||(42563001-42563182)
chr3 (461-642)||(10425523-10425704)
chr3 (461-642)||(17468505-17468686)
chr3 (461-642)||(25788571-25788752)
chr3 (461-642)||(42599226-42599407)
chr3 (461-642)||(47146362-47146543)
chr3 (461-642)||(25830528-25830709)
chr3 (480-642)||(6046218-6046380)
chr3 (540-660)||(33188901-33189021)
chr3 (485-628)||(21227202-21227345)
chr3 (562-642)||(51429021-51429100)
chr3 (591-642)||(25788781-25788832)
chr3 (591-642)||(25788928-25788979)
chr3 (591-642)||(25830738-25830789)
chr3 (591-642)||(25830885-25830936)
chr3 (591-642)||(47146036-47146087)
chr3 (591-642)||(47146202-47146253)
chr3 (582-642)||(42599585-42599645)
chr3 (591-642)||(42562769-42562820)
chr3 (591-642)||(42599436-42599487)
chr3 (591-642)||(42599475-42599526)
chr3 (591-642)||(47146323-47146374)
chr3 (461-641)||(21230393-21230574)
chr3 (593-645)||(42562805-42562857)
chr3 (591-642)||(6046450-6046501)
chr3 (591-642)||(6046612-6046663)
chr3 (591-642)||(6046733-6046784)
chr3 (591-642)||(42599555-42599606)
chr3 (591-645)||(17468461-17468517)
chr3 (591-645)||(30416496-30416552)
chr3 (271-388)||(32240660-32240779)
chr3 (591-645)||(42599395-42599451)
chr3 (591-645)||(42599514-42599570)
chr3 (533-574)||(53722743-53722784)
chr3 (592-645)||(10425816-10425871)
[»] chr7 (16 HSPs)
chr7 (461-642)||(22658938-22659119)
chr7 (460-645)||(32128091-32128276)
chr7 (460-641)||(26814175-26814356)
chr7 (461-642)||(36520521-36520702)
chr7 (461-642)||(22193305-22193486)
chr7 (591-660)||(26814117-26814186)
chr7 (591-660)||(32128300-32128369)
chr7 (591-642)||(22193078-22193129)
chr7 (591-642)||(22193225-22193276)
chr7 (62-155)||(11599311-11599402)
chr7 (591-635)||(22658622-22658666)
chr7 (591-642)||(22658573-22658624)
chr7 (591-642)||(22658654-22658705)
chr7 (591-642)||(22658693-22658744)
chr7 (591-643)||(22658731-22658783)
chr7 (582-642)||(32128252-32128312)
[»] chr6 (21 HSPs)
chr6 (461-641)||(18641297-18641477)
chr6 (461-610)||(8221233-8221382)
chr6 (461-642)||(34840500-34840681)
chr6 (460-642)||(24917448-24917630)
chr6 (461-642)||(17959161-17959342)
chr6 (461-642)||(633759-633940)
chr6 (461-642)||(6378293-6378474)
chr6 (467-563)||(24114211-24114307)
chr6 (591-660)||(24917618-24917687)
chr6 (582-642)||(8220864-8220924)
chr6 (591-648)||(8220897-8220954)
chr6 (582-660)||(18641239-18641317)
chr6 (591-648)||(8220936-8220993)
chr6 (591-642)||(633385-633436)
chr6 (591-642)||(633532-633583)
chr6 (591-642)||(633679-633730)
chr6 (591-642)||(6378503-6378554)
chr6 (591-642)||(6378650-6378701)
chr6 (591-642)||(8221148-8221199)
chr6 (582-641)||(24114148-24114207)
chr6 (591-645)||(17959330-17959386)
[»] chr5 (14 HSPs)
chr5 (461-642)||(29617392-29617573)
chr5 (461-642)||(30646727-30646908)
chr5 (461-642)||(4579098-4579279)
chr5 (461-642)||(32974221-32974402)
chr5 (461-642)||(40890816-40890997)
chr5 (461-642)||(27944645-27944826)
chr5 (591-642)||(27406303-27406354)
chr5 (593-642)||(4578977-4579026)
chr5 (533-574)||(34918157-34918198)
chr5 (591-642)||(27944483-27944534)
chr5 (602-642)||(27406275-27406315)
chr5 (591-638)||(29617728-29617775)
chr5 (591-645)||(4579054-4579110)
chr5 (591-644)||(4578934-4578989)
[»] scaffold0004 (3 HSPs)
scaffold0004 (460-638)||(104888-105066)
scaffold0004 (591-660)||(104788-104857)
scaffold0004 (582-642)||(104845-104905)
[»] scaffold0658 (1 HSPs)
scaffold0658 (532-650)||(7019-7136)
[»] scaffold0007 (1 HSPs)
scaffold0007 (485-641)||(167228-167384)


Alignment Details
Target: chr2 (Bit Score: 502; Significance: 0; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 19 - 660
Target Start/End: Original strand, 40879265 - 40879898
Alignment:
Q  19 cactaggattggtatttatactaataaaaattaacctatccttctaactgactttgcgcagttaggtacaagtagttatgattagttaaactaactctag 118  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40879265 cactaggattggtatttatactaataacaattaacctatccttctaactgactttgcgcagttaggtacaagtagttatgattagttaaactaactctag 40879364  T
Q  119 ttgattgggataactgaataacagattgtggaatctgctattcaggtttggtatacagatcgtggaatctattattcaggtttggtatgctacagcagga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  40879365 ttgattgggataactgaataacagattgtggaatctgctattcaggtttggtatacagatcgtggaatctattattcaggtttggtaggctacagcagga 40879464  T
Q  219 tgaactgcagttactctattagttatggagatatttcagagaaaggttttgctgaaccaacagaagaagaaaaatcaaaggtagataaataaacaggtcg 318  Q
    ||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40879465 tgaactgcagttactctattagttatgg-----tttcagagaaaggttttgctgaaccaacagaagaagaaaaatcaaaggtagataaataaacaggtcg 40879559  T
Q  319 aaaagtatattatactcaattaaaaagttgtgcttttaacatgtcaatatatgtggagcagcctggtcttggnnnnnnnnttcatattacaacagcaaag 418  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||    
T  40879560 aaaagtatattatactcaactaaaaagttgtgcttttaacatgtcaatatatgtggagcagcctggtcttgg-aaaaaaattcatattacaacagcaaag 40879658  T
Q  419 gactagacaacatattgaagaaagagatttgtttcttcaatctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttggg 518  Q
    ||| ||||||||  ||||||||| | |||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||| ||| ||||||     
T  40879659 gacaagacaacagtttgaagaaacatatttgtttcttcaatctgtatgtaaagttaagttccaaagagcatctcgatgatcggaaaaaggagctgttgga 40879758  T
Q  519 aaagttggagcgtgagctgttttgaaattaatttcaatcaaatatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgcttta 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||  ||||||||||||||||||||||||||||    
T  40879759 aaagttggagcgtgagctgttttgaaattaatttcaatcaaatatttgtttg--ttcggtcaaaattgtcagtgttgtctagtccccagtgtttgcttta 40879856  T
Q  619 acaattgtcagtgttgtctagtcctcagtgatagtccctagt 660  Q
    | |||||||||||||||||||||||| |||||||||| ||||    
T  40879857 ataattgtcagtgttgtctagtcctcggtgatagtccttagt 40879898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 461 - 642
Target Start/End: Original strand, 7586400 - 7586581
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  7586400 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaa 7586499  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  7586500 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 7586581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 460 - 650
Target Start/End: Original strand, 31205799 - 31205990
Alignment:
Q  460 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaa 559  Q
    |||||||||| ||||||||  ||| |  |||||||||| |||||||||||| |||||| ||| |||||  |||||||||||  |||||||||||||||||    
T  31205799 ctgtatgtaatgttaagttctgaagaatatctcgatgaccggaaaaaagagatgttggaaaacttggaatgtgagctgtttgaaaattaatttcaatcaa 31205898  T
Q  560 atatttgtttgtattcagtcaaaattgtcgatg-ttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtgat 650  Q
    |||||||||||||||| || | |||||||  || ||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||    
T  31205899 atatttgtttgtattcggtaataattgtcagtgtttgtctagtccccagtgtttgctttaataattgttagtgttgtctagttctcagtgat 31205990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 461 - 642
Target Start/End: Complemental strand, 8854269 - 8854088
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  |||||||||||||||||||||  |||||||||| |||||||    
T  8854269 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaattttaatcaaa 8854170  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | ||||||||||||  |||||||||||||||||||||    
T  8854169 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatcattgtcagtgttgtctagtcc 8854088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 461 - 642
Target Start/End: Original strand, 9073783 - 9073964
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  |||||||||||||||||||||  |||||||||| |||||||    
T  9073783 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaattttaatcaaa 9073882  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  9073883 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 9073964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 461 - 642
Target Start/End: Original strand, 30820480 - 30820661
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  |||||||||||||||||||||  |||||||||| |||||||    
T  30820480 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaattttaatcaaa 30820579  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  30820580 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 30820661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 461 - 642
Target Start/End: Complemental strand, 12857149 - 12856968
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  || ||||||||||||||||||  |||||||||| |||||||    
T  12857149 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaatttggagcgtgagctgtttgaaaattaattttaatcaaa 12857050  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  12857049 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 12856968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 460 - 633
Target Start/End: Original strand, 31186083 - 31186255
Alignment:
Q  460 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaa 559  Q
    |||||||||| |||||||| || | | ||||||||||| |||||||||||| |||||| ||| ||||| ||||||||||||  |||||||||||||||||    
T  31186083 ctgtatgtaatgttaagttccggagaacatctcgatgaccggaaaaaagagatgttggaaaacttggaacgtgagctgtttgaaaattaatttcaatcaa 31186182  T
Q  560 atatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgtt 633  Q
    |||||||||||||||| || | |||||||  ||||||||||| |||||||||| |||||| |||||||||||||    
T  31186183 atatttgtttgtattcggtaataattgtcagtgttgtctagt-cccagtgttttctttaataattgtcagtgtt 31186255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 460 - 547
Target Start/End: Complemental strand, 4278343 - 4278258
Alignment:
Q  460 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaatt 547  Q
    |||||||||||||||||||||||| ||||||||||||| ||  ||||| || |||||| | |||||||||||||||||||| ||||||    
T  4278343 ctgtatgtaaagttaagtttcgaagagcatctcgatgaccg--aaaaatagctgttggaagagttggagcgtgagctgtttggaaatt 4278258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 591 - 642
Target Start/End: Complemental strand, 8853977 - 8853926
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  8853977 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 8853926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 591 - 642
Target Start/End: Complemental strand, 12856939 - 12856888
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  12856939 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 12856888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 533 - 574
Target Start/End: Original strand, 6333067 - 6333108
Alignment:
Q  533 agctgttttgaaattaatttcaatcaaatatttgtttgtatt 574  Q
    |||||||| |||||||||||||||||||||||||| ||||||    
T  6333067 agctgtttggaaattaatttcaatcaaatatttgtctgtatt 6333108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 591 - 640
Target Start/End: Original strand, 9073993 - 9074042
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagt 640  Q
    ||||||||||||| || |||||||||||| |||| |||||||||||||||    
T  9073993 tgttgtctagtcctcactgtttgctttaataattatcagtgttgtctagt 9074042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 591 - 645
Target Start/End: Original strand, 7586569 - 7586625
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctca 645  Q
    |||||||||||||  |||||||||||||| |||| ||  ||||||||||||||||||    
T  7586569 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctca 7586625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 591 - 645
Target Start/End: Original strand, 9073952 - 9074008
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctca 645  Q
    |||||||||||||  |||||||||||||| |||| ||  ||||||||||||||||||    
T  9073952 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctca 9074008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 591 - 645
Target Start/End: Original strand, 30820649 - 30820705
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctca 645  Q
    |||||||||||||  |||||||||||||| |||| ||  ||||||||||||||||||    
T  30820649 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctca 30820705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 148; Significance: 9e-78; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 461 - 660
Target Start/End: Original strand, 30530474 - 30530673
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    |||||||||||||||||| | || ||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  30530474 tgtatgtaaagttaagttccaaagagcatctcgatgaccggaaaaaagagctgttggaaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 30530573  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtgatagtccctagt 660  Q
    ||||||||||||||| ||||||||||||  |||||||||||||| || |||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  30530574 tatttgtttgtattcggtcaaaattgtcagtgttgtctagtcccgagcgtttactttaataattgtcagtgttgtctagtcctcagtgatagtccctagt 30530673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 461 - 650
Target Start/End: Complemental strand, 27359345 - 27359156
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    ||||| |||||||||||| |||| ||||||||||||  || || ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  27359345 tgtatctaaagttaagttccgaagagcatctcgatggccgtaagaaagagttgttggaaaagttggagcgtgagctgtttggaaattaatttcaatcaaa 27359246  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtgat 650  Q
    ||||||||||||||| |||||||||||  |||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  27359245 tatttgtttgtattcggtcaaaattgtaaatgttgtctaatccccagtgtttgctttaataattgtcaatgttgtctagtcctcagtgat 27359156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 461 - 650
Target Start/End: Complemental strand, 27368702 - 27368513
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    ||||| |||||||||||| |||| ||||||||||||  || || ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  27368702 tgtatctaaagttaagttccgaagagcatctcgatggccgtaagaaagagttgttggaaaagttggagcgtgagctgtttggaaattaatttcaatcaaa 27368603  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtgat 650  Q
    ||||||||||||||| |||||||||||  |||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  27368602 tatttgtttgtattcggtcaaaattgtaaatgttgtctaatccccagtgtttgctttaataattgtcaatgttgtctagtcctcagtgat 27368513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 461 - 650
Target Start/End: Complemental strand, 17743864 - 17743675
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    |||||||||||||||||| |||| ||||||||||||| ||||||||||||  ||||| ||| ||||||||||||||||||  |||||||||||||||||     
T  17743864 tgtatgtaaagttaagttccgaagagcatctcgatgaccggaaaaaagagacgttggaaaacttggagcgtgagctgtttgcaaattaatttcaatcaac 17743765  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtgat 650  Q
    ||||||||||||||| || | |||||||  ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  17743764 tatttgtttgtattcggtaataattgtcagtgttgtctagtccccagtgtttgctttaataattgtcaatgttgtctagtcctcagtgat 17743675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 461 - 642
Target Start/End: Complemental strand, 15055819 - 15055638
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    ||||| |||||||||||| |||| ||||||||||||| ||||| || ||| ||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  15055819 tgtatctaaagttaagttccgaagagcatctcgatgaccggaagaaggagctgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaa 15055720  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    ||||||||||||||||||||||||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  15055719 tatttgtttgtattcagtcaaaattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 15055638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 461 - 642
Target Start/End: Original strand, 1956150 - 1956331
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  1956150 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaa 1956249  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  1956250 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 1956331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 591 - 623
Target Start/End: Complemental strand, 15055484 - 15055452
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaat 623  Q
    |||||||||||||||| ||||||||||||||||    
T  15055484 tgttgtctagtccccactgtttgctttaacaat 15055452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1240 (Bit Score: 141; Significance: 1e-73; HSPs: 1)
Name: scaffold1240
Description:

Target: scaffold1240; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 460 - 660
Target Start/End: Original strand, 557 - 757
Alignment:
Q  460 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaa 559  Q
    ||||||||||||||||||| |||| ||||||||||||| ||| |||||||| |||||| ||| |||||||||||||||||| ||||||||||||||||||    
T  557 ctgtatgtaaagttaagttccgaagagcatctcgatgaccgggaaaaagagctgttggaaaacttggagcgtgagctgtttggaaattaatttcaatcaa 656  T
Q  560 atatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtgatagtccctag 659  Q
    ||| |||||||||||| ||||||||||||  |||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  657 ataattgtttgtattcggtcaaaattgtcagtgttgtatagtccccagtgtttgctttaataattgtcagtgttgtctagtcctcaatgatagtccctag 756  T
Q  660 t 660  Q
    |    
T  757 t 757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 139; Significance: 2e-72; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 486 - 660
Target Start/End: Original strand, 34435401 - 34435575
Alignment:
Q  486 gcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaatatttgtttgtattcagtcaaaatt 585  Q
    ||||||||| || ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  34435401 gcatctcgacgaccggaaaaaagagttgttggaaaagttggagcgtgagctattttgaaattaatttcaatcaaatatttgtttgtattcggtcaaaatt 34435500  T
Q  586 gtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtgatagtccctagt 660  Q
    ||| ||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  34435501 gtcaatgttgtctagtccctagtgtttgctttaataattgttagtgttgtctagtcctcagtgatagtccctagt 34435575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 463 - 641
Target Start/End: Complemental strand, 33606273 - 33606095
Alignment:
Q  463 tatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaata 562  Q
    |||||||||||||||| |||| ||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  33606273 tatgtaaagttaagttccgaagagcatctcgatgaccggaaaaaagagttgttggaagagttggagcgtgagctgttttgaaattaatttcaatcaaata 33606174  T
Q  563 tttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtc 641  Q
    |||||| |||||| ||||||||||||  ||||||||||| |||| ||||| |||||| |||||| ||||||||||||||    
T  33606173 tttgttggtattcggtcaaaattgtcagtgttgtctagttcccaatgtttactttaataattgttagtgttgtctagtc 33606095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 461 - 642
Target Start/End: Original strand, 16172718 - 16172899
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    ||||| |||||||||||| |||| ||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  16172718 tgtatctaaagttaagttccgaagagcatctcgatgaccggaagaaagagctgttgggaaagttggagcgtgagctgtttggaaattaattttaatcaaa 16172817  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    ||||||||||||||||||||||||| ||  |||| ||||||||| |||||||||||||| | |||||||||||| |||||||    
T  16172818 tatttgtttgtattcagtcaaaattatcagtgttatctagtcccgagtgtttgctttaatatttgtcagtgttgcctagtcc 16172899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 461 - 642
Target Start/End: Complemental strand, 8993958 - 8993777
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  8993958 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaa 8993859  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  8993858 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 8993777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 461 - 642
Target Start/End: Complemental strand, 13112736 - 13112555
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  13112736 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaa 13112637  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  13112636 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 13112555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 461 - 642
Target Start/End: Original strand, 3616115 - 3616296
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||| ||||||||||||||| |||||  |||||||||| |||||||    
T  3616115 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagttgtttgaaaattaattttaatcaaa 3616214  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  3616215 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccaactgtttgctttaatatttgtcagtgttgtctagtcc 3616296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 461 - 642
Target Start/End: Original strand, 46915340 - 46915521
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    ||||| ||||||||||   |||| ||||| ||||||| ||||| || ||| ||||||  |||||||||||||||||||||  |||||||||| |||||||    
T  46915340 tgtatctaaagttaagggacgaagagcatgtcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaattttaatcaaa 46915439  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  46915440 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 46915521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 480 - 642
Target Start/End: Original strand, 3531145 - 3531307
Alignment:
Q  480 cgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaatatttgtttgtattcagtc 579  Q
    |||| ||||||||||||| ||||| || ||| ||||||| |||||||||| ||||||||||  |||||||||| ||||||||||||||||||||||||||    
T  3531145 cgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcatgagctgtttgaaaattaattttaatcaaatatttgtttgtattcagtc 3531244  T
Q  580 aaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    || ||| ||  |||||||||||| | | |||||||||||| | ||||||||||||||||||||    
T  3531245 aacattatcagtgttgtctagtctcgactgtttgctttaatatttgtcagtgttgtctagtcc 3531307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 461 - 642
Target Start/End: Original strand, 2213146 - 2213326
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  |||||||||||||||||||||  |||||||||| |||||||    
T  2213146 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaattttaatcaaa 2213245  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | |||||| |||||||||||||    
T  2213246 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtca-tgttgtctagtcc 2213326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 460 - 609
Target Start/End: Complemental strand, 36657730 - 36657582
Alignment:
Q  460 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaa 559  Q
    ||||||||||||||||||| |||| |||||||| |||| || |||||| || |||| | ||| ||||||||||||||||||  |||||||||||||||||    
T  36657730 ctgtatgtaaagttaagttccgaagagcatctcaatgaccg-aaaaaatagctgttagaaaacttggagcgtgagctgtttgaaaattaatttcaatcaa 36657632  T
Q  560 atatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtg 609  Q
    |||||||||||||||  ||||||||||||  ||||||||||||| |||||    
T  36657631 atatttgtttgtatttggtcaaaattgtcagtgttgtctagtcctcagtg 36657582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 461 - 584
Target Start/End: Complemental strand, 28446471 - 28446348
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    |||||||||||||||||  |||| |||||||| |||| ||||| |||||| |||||| |||||||| |  |||| |||||||||||||||||||||||||    
T  28446471 tgtatgtaaagttaagtcccgaagagcatctcaatgaccggaagaaagagatgttggaaaagttggtgtttgagttgttttgaaattaatttcaatcaaa 28446372  T
Q  561 tatttgtttgtattcagtcaaaat 584  Q
    ||||||||||||||||||||||||    
T  28446371 tatttgtttgtattcagtcaaaat 28446348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 461 - 660
Target Start/End: Original strand, 53182276 - 53182460
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    ||||| ||||||||||||  ||| ||||||| ||||| |||||||||||| |||||| ||| |||| |||||||||||||||||||                  
T  53182276 tgtatctaaagttaagttctgaagagcatcttgatgaccggaaaaaagagctgttggaaaacttggtgcgtgagctgttttgaaat-------------- 53182361  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtgatagtccctagt 660  Q
     |||||||||||||| ||||||||||||  ||||||||||  |||| ||||| |||||| |||||||||| |||||||||||||||||||||||||||||    
T  53182362 -atttgtttgtattcggtcaaaattgtcagtgttgtctaggtcccaatgtttactttaataattgtcagtattgtctagtcctcagtgatagtccctagt 53182460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 591 - 660
Target Start/End: Complemental strand, 33606106 - 33606037
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtgatagtccctagt 660  Q
    |||||||||||| ||| ||||| |||||| ||||| ||||||||||||||||||||||||||||||||||    
T  33606106 tgttgtctagtctccaatgtttactttaataattgacagtgttgtctagtcctcagtgatagtccctagt 33606037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 591 - 642
Target Start/End: Original strand, 2213437 - 2213488
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  2213437 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 2213488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 621 - 660
Target Start/End: Complemental strand, 36657609 - 36657570
Alignment:
Q  621 aattgtcagtgttgtctagtcctcagtgatagtccctagt 660  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  36657609 aattgtcagtgttgtctagtcctcagtgatagtccctagt 36657570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 591 - 642
Target Start/End: Original strand, 46915632 - 46915683
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  46915632 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 46915683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 591 - 642
Target Start/End: Original strand, 3531336 - 3531387
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    ||||||||||||| || |||||||||||| | ||||||||||||||||||||    
T  3531336 tgttgtctagtcctcactgtttgctttaatatttgtcagtgttgtctagtcc 3531387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 591 - 642
Target Start/End: Original strand, 16173055 - 16173106
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    |||||||||||||| | |||||||||||| |||| |||||||||||||||||    
T  16173055 tgttgtctagtcccgactgtttgctttaataattatcagtgttgtctagtcc 16173106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 591 - 642
Target Start/End: Original strand, 16173094 - 16173145
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    |||||||||||||| | |||||||||||| || | |||||||||||||||||    
T  16173094 tgttgtctagtcccgactgtttgctttaataaatatcagtgttgtctagtcc 16173145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 591 - 645
Target Start/End: Original strand, 3531295 - 3531351
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctca 645  Q
    |||||||||||||  |||||||||||||| |||| ||  ||||||||||||||||||    
T  3531295 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctca 3531351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 591 - 645
Target Start/End: Original strand, 3531457 - 3531513
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctca 645  Q
    ||||||||||||| || |||||||||||| |||| ||  ||||||||||||||||||    
T  3531457 tgttgtctagtcctcactgtttgctttaataattatcagagtgttgtctagtcctca 3531513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 591 - 645
Target Start/End: Complemental strand, 8993789 - 8993733
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctca 645  Q
    |||||||||||||  |||||||||||||| |||| ||  ||||||||||||||||||    
T  8993789 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctca 8993733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 591 - 645
Target Start/End: Complemental strand, 13112567 - 13112511
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctca 645  Q
    |||||||||||||  |||||||||||||| |||| ||  ||||||||||||||||||    
T  13112567 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctca 13112511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 137; Significance: 3e-71; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 460 - 660
Target Start/End: Complemental strand, 33166478 - 33166278
Alignment:
Q  460 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaa 559  Q
    ||||||||||||||||||| |||| || |||| ||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  33166478 ctgtatgtaaagttaagttccgaagagaatcttgatgaccggaaaaaagagctgttggaaaagttggagcgtgagctgttttgaaattaatttcaatcaa 33166379  T
Q  560 atatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtgatagtccctag 659  Q
    |||||||||||||||| ||||||||||||  |||||||||||| ||| | ||| |||||| |||||||||||||||||||||||||||||||||| ||||    
T  33166378 atatttgtttgtattcggtcaaaattgtcagtgttgtctagtctccaatttttactttaataattgtcagtgttgtctagtcctcagtgatagtctctag 33166279  T
Q  660 t 660  Q
    |    
T  33166278 t 33166278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 460 - 660
Target Start/End: Original strand, 47298395 - 47298595
Alignment:
Q  460 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaa 559  Q
    ||||||||||||||||||| |||| || |||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||| |    
T  47298395 ctgtatgtaaagttaagttccgaagagtatctcgatgaccggaaaaaagagctgttggaaaagttggagcgtgagctgttttgaaattaattgcaatcca 47298494  T
Q  560 atatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtgatagtccctag 659  Q
    |||||||||||||||| ||||||||||||  |||||| ||| ||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  47298495 atatttgtttgtattcggtcaaaattgtcagtgttgtttagaccccaatgtttgctttaataattgtcagtgttgtctagtcctcagtgatggtccctag 47298594  T
Q  660 t 660  Q
    |    
T  47298595 t 47298595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 460 - 660
Target Start/End: Original strand, 38837535 - 38837732
Alignment:
Q  460 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaa 559  Q
    |||||||||||||||| || |||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||   ||| ||||| |    
T  38837535 ctgtatgtaaagttaaattccgaagagcatctcgatgaccggaaaaaagagttgttggaaaagttggagcgtgagctgttttgaaa---attgcaatcca 38837631  T
Q  560 atatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtgatagtccctag 659  Q
    |||||||||||||||| ||||||||||||| ||||||| || || ||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||    
T  38837632 atatttgtttgtattcggtcaaaattgtcggtgttgtcaagacctcagtgtttgctttaataattgtcagtgttgtcaagttctcagtgatagtccctag 38837731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 460 - 660
Target Start/End: Complemental strand, 17785537 - 17785337
Alignment:
Q  460 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaa 559  Q
    ||||||||||||||||||| |||| |||||||||||||   |||||||||| |  ||| ||| |||||||||||||||||||||||||||||||||||||    
T  17785537 ctgtatgtaaagttaagttccgaagagcatctcgatgactagaaaaaagagctactggaaaacttggagcgtgagctgttttgaaattaatttcaatcaa 17785438  T
Q  560 atatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtgatagtccctag 659  Q
    ||| |||||||||||| ||||||||||||  |||||||||||| | |||||||||||||| |||| | ||||||||||||||||||||||||||||||||    
T  17785437 ataattgtttgtattcggtcaaaattgtcagtgttgtctagtctctagtgtttgctttaataattattagtgttgtctagtcctcagtgatagtccctag 17785338  T
Q  660 t 660  Q
    |    
T  17785337 t 17785337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 460 - 660
Target Start/End: Original strand, 17677157 - 17677358
Alignment:
Q  460 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcgg-aaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatca 558  Q
    ||||||||||||||||||| |||| ||||||||||||| ||| ||||||||| |||||| |||||||||||||||||| |||||||||||||| |||||     
T  17677157 ctgtatgtaaagttaagttccgaagagcatctcgatgaccgggaaaaaagagctgttggaaaagttggagcgtgagctattttgaaattaattgcaatcc 17677256  T
Q  559 aatatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtgatagtcccta 658  Q
    ||||||||||||||||| ||||||||||||  |||||||||| ||  |||||||| ||||| |||||||| ||||||||||||||||||||||| |||||    
T  17677257 aatatttgtttgtattcggtcaaaattgtcagtgttgtctagaccttagtgtttgttttaataattgtcaatgttgtctagtcctcagtgatagccccta 17677356  T
Q  659 gt 660  Q
    ||    
T  17677357 gt 17677358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 461 - 633
Target Start/End: Complemental strand, 51522515 - 51522343
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    |||||||||||||||||| |||| ||||||||||||| ||||| |||| | |||||| |||||||||||||||||||||||||||||||||||| |||||    
T  51522515 tgtatgtaaagttaagttccgaagagcatctcgatgaccggaagaaagtgctgttggaaaagttggagcgtgagctgttttgaaattaatttcactcaaa 51522416  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgtt 633  Q
    ||||||||||||||| ||||||||||||  ||||||||||||  ||||||||||||||| |||||||||||||    
T  51522415 tatttgtttgtattcggtcaaaattgtcagtgttgtctagtctacagtgtttgctttaataattgtcagtgtt 51522343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 461 - 648
Target Start/End: Complemental strand, 8470520 - 8470333
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    ||||| |||||||||||| |||| ||||||||||||| |||||  ||||| |||||||||||||||||| ||||||||||  || ||||||| ||| |||    
T  8470520 tgtatctaaagttaagttccgaagagcatctcgatgaccggaagtaagagctgttgggaaagttggagcttgagctgtttaaaagttaattttaattaaa 8470421  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtg 648  Q
    ||||||||||||||||||||||||| ||  |||||||||||||||| |||||||||||| |||| ||||||||||||||||| |||||    
T  8470420 tatttgtttgtattcagtcaaaattatcagtgttgtctagtccccaatgtttgctttaataattatcagtgttgtctagtccccagtg 8470333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 461 - 642
Target Start/End: Complemental strand, 48406600 - 48406419
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    ||||| |||||||||||| |||| ||||||||||||| || || |||||||||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  48406600 tgtatctaaagttaagttccgaagagcatctcgatgaccgaaagaaagagttgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaa 48406501  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    ||||||||| ||||||||||||||| ||  |||||||||||||| |||||||||||||| | |||||||| || ||||||||    
T  48406500 tatttgtttatattcagtcaaaattatcagtgttgtctagtcccgagtgtttgctttaatatttgtcagtattatctagtcc 48406419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 461 - 642
Target Start/End: Original strand, 48386046 - 48386227
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  48386046 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaa 48386145  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  48386146 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 48386227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 460 - 631
Target Start/End: Original strand, 18318635 - 18318805
Alignment:
Q  460 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaa 559  Q
    |||||| |||||||| ||| |||| ||||||||||||| ||||| |||||| | |||| |||||||||||||||||| |||  |||||||||||||||||    
T  18318635 ctgtatctaaagtta-gttccgaagagcatctcgatgaccggaagaaagagctattggaaaagttggagcgtgagctatttgaaaattaatttcaatcaa 18318733  T
Q  560 atatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtg 631  Q
    |||||||||||||||| || |||||||||  |||||||||||||||| |||||||||||| |||||||||||    
T  18318734 atatttgtttgtattcggttaaaattgtcagtgttgtctagtccccactgtttgctttaataattgtcagtg 18318805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 461 - 642
Target Start/End: Original strand, 2475990 - 2476171
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||| ||||||||||||||| |||||  |||||||||| |||||||    
T  2475990 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagttgtttgaaaattaattttaatcaaa 2476089  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  2476090 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccaactgtttgctttaatatttgtcagtgttgtctagtcc 2476171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 461 - 642
Target Start/End: Complemental strand, 31470458 - 31470277
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  |||||||||||||||||||||  |||||||||| |||||||    
T  31470458 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaattttaatcaaa 31470359  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  31470358 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 31470277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 461 - 642
Target Start/End: Complemental strand, 45241310 - 45241129
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  |||||||||||||||||||||  |||||||||| |||||||    
T  45241310 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaattttaatcaaa 45241211  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  45241210 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 45241129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 591 - 642
Target Start/End: Complemental strand, 8470312 - 8470261
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  8470312 tgttgtttagtccccagtgtttgctttaataattgtcagtgttgtctagtcc 8470261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 591 - 648
Target Start/End: Complemental strand, 8470351 - 8470294
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtg 648  Q
    ||||||||||||||||||||||||||||| |||| |||||||||| |||||| |||||    
T  8470351 tgttgtctagtccccagtgtttgctttaataattatcagtgttgtttagtccccagtg 8470294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 591 - 642
Target Start/End: Complemental strand, 31470047 - 31469996
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  31470047 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 31469996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 591 - 642
Target Start/End: Complemental strand, 31470209 - 31470158
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  31470209 tgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 31470158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 591 - 642
Target Start/End: Complemental strand, 31470248 - 31470197
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    ||||||||||||| || |||||||||||| |||| |||||||||||||||||    
T  31470248 tgttgtctagtcctcactgtttgctttaataattatcagtgttgtctagtcc 31470197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 250 - 297
Target Start/End: Complemental strand, 40037074 - 40037027
Alignment:
Q  250 tatttcagagaaaggttttgctgaaccaacagaagaagaaaaatcaaa 297  Q
    ||||| |||||||| ||||||||||| |||||||||||||||||||||    
T  40037074 tattttagagaaagattttgctgaacaaacagaagaagaaaaatcaaa 40037027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 605 - 650
Target Start/End: Complemental strand, 51522349 - 51522304
Alignment:
Q  605 cagtgtttgctttaacaattgtcagtgttgtctagtcctcagtgat 650  Q
    ||||||||||||||| ||||||||||||||||| ||||||| ||||    
T  51522349 cagtgtttgctttaataattgtcagtgttgtctcgtcctcaatgat 51522304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 591 - 645
Target Start/End: Complemental strand, 31470170 - 31470114
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctca 645  Q
    |||||||||||||  |||||||||||||| |||| ||  ||||||||||||||||||    
T  31470170 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctca 31470114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 591 - 645
Target Start/End: Complemental strand, 31470289 - 31470233
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctca 645  Q
    |||||||||||||  |||||||||||||| |||| ||  ||||||||||||||||||    
T  31470289 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctca 31470233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 591 - 645
Target Start/End: Complemental strand, 45241141 - 45241085
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctca 645  Q
    |||||||||||||  |||||||||||||| |||| ||  ||||||||||||||||||    
T  45241141 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctca 45241085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 591 - 645
Target Start/End: Original strand, 48386215 - 48386271
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctca 645  Q
    |||||||||||||  |||||||||||||| |||| ||  ||||||||||||||||||    
T  48386215 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctca 48386271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 591 - 645
Target Start/End: Original strand, 48386256 - 48386312
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctca 645  Q
    ||||||||||||| || |||||||||||| |||| ||  ||||||||||||||||||    
T  48386256 tgttgtctagtcctcactgtttgctttaataattatcagagtgttgtctagtcctca 48386312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 135; Significance: 5e-70; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 461 - 660
Target Start/End: Complemental strand, 33750855 - 33750654
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    |||||||||||||||||| |||| ||||||||||||| |||||||||||| |||||| ||| |||||||||||||| ||| |||||||||||||||||||    
T  33750855 tgtatgtaaagttaagttccgaagagcatctcgatgaccggaaaaaagaggtgttggaaaacttggagcgtgagctttttggaaattaatttcaatcaaa 33750756  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattg--tcagtgttgtctagtcctcagtgatagtcccta 658  Q
    || |||||||||||| ||||||||||||  ||||||||||||||||||||||||||||| |||||  ||||||||||||| |||||||||||||||||||    
T  33750755 taattgtttgtattcggtcaaaattgtcagtgttgtctagtccccagtgtttgctttaataattgtttcagtgttgtctaatcctcagtgatagtcccta 33750656  T
Q  659 gt 660  Q
    ||    
T  33750655 gt 33750654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 460 - 659
Target Start/End: Complemental strand, 50019290 - 50019091
Alignment:
Q  460 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaa 559  Q
    ||||||||||||||||||| |||| |||||||||||||   ||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||    
T  50019290 ctgtatgtaaagttaagttccgaagagcatctcgatgactagaaaaaagagttgttggaaaacttggagcgtgagctgtttggaaattaatttcaatcaa 50019191  T
Q  560 atatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtgatagtccctag 659  Q
    ||||||||||||||||  ||||||||||   ||||||||||||||||||||||||||||| |||||| ||| |||| ||||||| |||||||||||||||    
T  50019190 atatttgtttgtattcgatcaaaattgttagtgttgtctagtccccagtgtttgctttaataattgttagttttgtatagtccttagtgatagtccctag 50019091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 460 - 660
Target Start/End: Original strand, 26157948 - 26158148
Alignment:
Q  460 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaa 559  Q
    |||||||||||||||||||  ||| ||||||| ||||| || ||||||| ||||||||   ||||||  |||||| ||||||||||||||||||| ||||    
T  26157948 ctgtatgtaaagttaagttctgaagagcatcttgatgaccgaaaaaaagcgttgttggaggagttggtacgtgagttgttttgaaattaatttcagtcaa 26158047  T
Q  560 atatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtgatagtccctag 659  Q
    ||||||| |||||||| ||||||||||||  |||||||||||||||| ||||| |||||| || ||||||||||||||||||||||||||||||||||||    
T  26158048 atatttggttgtattcggtcaaaattgtcagtgttgtctagtccccaatgtttactttaataagtgtcagtgttgtctagtcctcagtgatagtccctag 26158147  T
Q  660 t 660  Q
    |    
T  26158148 t 26158148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 461 - 642
Target Start/End: Original strand, 30416327 - 30416508
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  30416327 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaa 30416426  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  30416427 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 30416508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 461 - 642
Target Start/End: Complemental strand, 42563182 - 42563001
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    ||||| ||||||||||||||||| ||||||||||||| ||||| || ||| ||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  42563182 tgtatctaaagttaagtttcgaagagcatctcgatgaccggaagaaggagctgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaa 42563083  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    ||||||||||||||||||||| ||| |   ||||||||||||||   |||||||||||| | ||||||||||||||| ||||    
T  42563082 tatttgtttgtattcagtcaacattattagtgttgtctagtcccgtctgtttgctttaatatttgtcagtgttgtctggtcc 42563001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 461 - 642
Target Start/End: Original strand, 10425523 - 10425704
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    ||||| ||||||||||   |||| ||||||||||||| | ||| || ||| ||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  10425523 tgtatctaaagttaagggacgaagagcatctcgatgaccagaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaa 10425622  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  10425623 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 10425704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 461 - 642
Target Start/End: Complemental strand, 17468686 - 17468505
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  |||||||||||||||||||||  |||||||||| |||||||    
T  17468686 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaattttaatcaaa 17468587  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  17468586 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 17468505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 461 - 642
Target Start/End: Original strand, 25788571 - 25788752
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  |||||||||||||||||||||  |||||||||| |||||||    
T  25788571 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaattttaatcaaa 25788670  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  25788671 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 25788752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 461 - 642
Target Start/End: Original strand, 42599226 - 42599407
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  |||||||||||||||||||||  |||||||||| |||||||    
T  42599226 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaattttaatcaaa 42599325  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  42599326 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 42599407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 461 - 642
Target Start/End: Complemental strand, 47146543 - 47146362
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  |||||||||||||||||||||  |||||||||| |||||||    
T  47146543 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaattttaatcaaa 47146444  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  47146443 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 47146362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 461 - 642
Target Start/End: Original strand, 25830528 - 25830709
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  || ||||||||||||||||||  |||||||||| |||||||    
T  25830528 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaatttggagcgtgagctgtttgaaaattaattttaatcaaa 25830627  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  25830628 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 25830709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 480 - 642
Target Start/End: Original strand, 6046218 - 6046380
Alignment:
Q  480 cgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaatatttgtttgtattcagtc 579  Q
    |||| ||||||||||||| ||||| || ||| ||||||| |||||||||||||||||||||  |||||||||| |||||||||||||||||||||| |||    
T  6046218 cgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaatatttgtttgtattccgtc 6046317  T
Q  580 aaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    || ||| ||  |||||||||||||  | |||||||||||| | ||||||||||||||||||||    
T  6046318 aacattatcagtgttgtctagtcctgactgtttgctttaatatttgtcagtgttgtctagtcc 6046380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 540 - 660
Target Start/End: Original strand, 33188901 - 33189021
Alignment:
Q  540 ttgaaattaatttcaatcaaatatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctag 639  Q
    |||||||||||| ||||| | ||||||||||||||| |||||||||||   |||||||||| || ||||||||| ||||| |||||||||||||||||||    
T  33188901 ttgaaattaattgcaatccagtatttgtttgtattcggtcaaaattgttagtgttgtctagacctcagtgtttgttttaataattgtcagtgttgtctag 33189000  T
Q  640 tcctcagtgatagtccctagt 660  Q
    ||||| |||||||||||||||    
T  33189001 tcctcggtgatagtccctagt 33189021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 485 - 628
Target Start/End: Complemental strand, 21227345 - 21227202
Alignment:
Q  485 agcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaatatttgtttgtattcagtcaaaat 584  Q
    ||||||||||||| ||||| |||||| |||||||||||||||  |  || |||||| |||||||||||||||||| ||||||||||||||| |||||| |    
T  21227345 agcatctcgatgaccggaagaaagagatgttgggaaagttgggccaagaactgtttggaaattaatttcaatcaattatttgtttgtattcggtcaaact 21227246  T
Q  585 tgtcgatgttgtctagtccccagtgtttgctttaacaattgtca 628  Q
    || |  ||||||| ||||||| ||||||||||||| ||||||||    
T  21227245 tggcagtgttgtcaagtccccggtgtttgctttaataattgtca 21227202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 562 - 642
Target Start/End: Complemental strand, 51429100 - 51429021
Alignment:
Q  562 atttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    |||||||||||||| |||||||||||| |||||||||||| |||| ||||| |||||| ||||||||||||||||||||||    
T  51429100 atttgtttgtattcggtcaaaattgtc-atgttgtctagttcccaatgtttactttaataattgtcagtgttgtctagtcc 51429021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 591 - 642
Target Start/End: Original strand, 25788781 - 25788832
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  25788781 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 25788832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 591 - 642
Target Start/End: Original strand, 25788928 - 25788979
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  25788928 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 25788979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 591 - 642
Target Start/End: Original strand, 25830738 - 25830789
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  25830738 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 25830789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 591 - 642
Target Start/End: Original strand, 25830885 - 25830936
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  25830885 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 25830936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 591 - 642
Target Start/End: Complemental strand, 47146087 - 47146036
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  47146087 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 47146036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 591 - 642
Target Start/End: Complemental strand, 47146253 - 47146202
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  47146253 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 47146202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 582 - 642
Target Start/End: Original strand, 42599585 - 42599645
Alignment:
Q  582 aattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    |||| ||| |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  42599585 aattatcggtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 42599645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 591 - 642
Target Start/End: Complemental strand, 42562820 - 42562769
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    ||||||||||||| || |||||||||||| |||| |||||||||||||||||    
T  42562820 tgttgtctagtcctcactgtttgctttaataattatcagtgttgtctagtcc 42562769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 591 - 642
Target Start/End: Original strand, 42599436 - 42599487
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    ||||||||||||| || |||||||||||| |||| |||||||||||||||||    
T  42599436 tgttgtctagtcctcactgtttgctttaataattatcagtgttgtctagtcc 42599487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 591 - 642
Target Start/End: Original strand, 42599475 - 42599526
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  42599475 tgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 42599526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 591 - 642
Target Start/End: Complemental strand, 47146374 - 47146323
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    |||||||||||||  |||||||||||||| | ||||||||||||||||||||    
T  47146374 tgttgtctagtccgtagtgtttgctttaatatttgtcagtgttgtctagtcc 47146323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 461 - 641
Target Start/End: Original strand, 21230393 - 21230574
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    ||||| ||||| |||||| | || ||||||||||||| | ||| |||||  |||||| ||||||||  |  || || ||| ||||||||||| ||||||     
T  21230393 tgtatataaagataagttccaaagagcatctcgatgaccagaagaaagatatgttggaaaagttgggccaagaactatttggaaattaattttaatcaat 21230492  T
Q  561 tatttgtttgtattcagtcaaaa-ttgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtc 641  Q
    ||||||  ||  ||| | | ||| ||| |  || |||| ||||||||||||||||||||| ||||||||||| |||| ||||    
T  21230493 tatttgactgagttccgaccaaacttggcagtgctgtcaagtccccagtgtttgctttaataattgtcagtgatgtcaagtc 21230574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 593 - 645
Target Start/End: Complemental strand, 42562857 - 42562805
Alignment:
Q  593 ttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctca 645  Q
    |||||||| || || |||||||||||| |||| ||||||||||||||||||||    
T  42562857 ttgtctagccctcattgtttgctttaataattatcagtgttgtctagtcctca 42562805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 591 - 642
Target Start/End: Original strand, 6046450 - 6046501
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    |||||||||||||  | |||||||||||| | ||||||||||||||||||||    
T  6046450 tgttgtctagtcctgactgtttgctttaatatttgtcagtgttgtctagtcc 6046501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 591 - 642
Target Start/End: Original strand, 6046612 - 6046663
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    |||||||||||||  | |||||||||||| | ||||||||||||||||||||    
T  6046612 tgttgtctagtcctgactgtttgctttaatatttgtcagtgttgtctagtcc 6046663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 591 - 642
Target Start/End: Original strand, 6046733 - 6046784
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    |||||||||||||  | |||||||||||| | ||||||||||||||||||||    
T  6046733 tgttgtctagtcctgactgtttgctttaatatttgtcagtgttgtctagtcc 6046784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 591 - 642
Target Start/End: Original strand, 42599555 - 42599606
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    ||||||||||||| || |||||||||||| |||| || ||||||||||||||    
T  42599555 tgttgtctagtcctcactgtttgctttaataattatcggtgttgtctagtcc 42599606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 591 - 645
Target Start/End: Complemental strand, 17468517 - 17468461
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctca 645  Q
    |||||||||||||  |||||||||||||| |||| ||  ||||||||||||||||||    
T  17468517 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctca 17468461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 591 - 645
Target Start/End: Original strand, 30416496 - 30416552
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctca 645  Q
    |||||||||||||  |||||||||||||| |||| ||  ||||||||||||||||||    
T  30416496 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctca 30416552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 388
Target Start/End: Original strand, 32240660 - 32240779
Alignment:
Q  271 tgaaccaacagaagaagaaaaatcaaaggtagataaat--aaacaggtcg-aaaagtatattatactcaattaaaaagttgtgcttttaacatgtcaata 367  Q
    |||||||| ||||||||||||||||||||| ||| |||  |||||||| | ||||  ||||| ||  |||||||||| ||  |||||||| |||||| ||    
T  32240660 tgaaccaatagaagaagaaaaatcaaaggttgatcaataaaaacaggtagaaaaaagatattttatgcaattaaaaactt-cgcttttaatatgtcagta 32240758  T
Q  368 tatgtggagcagcctggtctt 388  Q
    |||| ||||| ||||| ||||    
T  32240759 tatgaggagctgcctgatctt 32240779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 591 - 645
Target Start/End: Original strand, 42599395 - 42599451
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctca 645  Q
    |||||||||||||  |||||||||||||| |||| ||  ||||||||||||||||||    
T  42599395 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctca 42599451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 591 - 645
Target Start/End: Original strand, 42599514 - 42599570
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctca 645  Q
    |||||||||||||  |||||||||||||| |||| ||  ||||||||||||||||||    
T  42599514 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctca 42599570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 574
Target Start/End: Complemental strand, 53722784 - 53722743
Alignment:
Q  533 agctgttttgaaattaatttcaatcaaatatttgtttgtatt 574  Q
    ||||||||  ||||||||||||||||||||||||| ||||||    
T  53722784 agctgtttgaaaattaatttcaatcaaatatttgtctgtatt 53722743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 592 - 645
Target Start/End: Original strand, 10425816 - 10425871
Alignment:
Q  592 gttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctca 645  Q
    |||||||||||| || |||||||||||| |||| ||  ||||||||||||||||||    
T  10425816 gttgtctagtcctcactgtttgctttaataattatcagagtgttgtctagtcctca 10425871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 4e-55; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 461 - 642
Target Start/End: Complemental strand, 22659119 - 22658938
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    ||||| ||||||||||||||||| ||||||||||||| ||||| |||||| |||||||   |||||||||||||||||||  |||||||||| |||||||    
T  22659119 tgtatctaaagttaagtttcgaagagcatctcgatgaccggaagaaagagctgttggggctgttggagcgtgagctgtttgaaaattaattttaatcaaa 22659020  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    ||||||||||||||||||||||||| ||  |||||||||||| | |||||||||||||| | ||||||||||||||||||||    
T  22659019 tatttgtttgtattcagtcaaaattatcagtgttgtctagtctcgagtgtttgctttaatatttgtcagtgttgtctagtcc 22658938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 460 - 645
Target Start/End: Original strand, 32128091 - 32128276
Alignment:
Q  460 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaa 559  Q
    ||||||||||||||||||| |||| ||||||| ||||| |||||||||| ||||||||   |||||||||||||||||||||||||||||||||| ||||    
T  32128091 ctgtatgtaaagttaagttccgaagagcatcttgatgaccggaaaaaagcgttgttggaggagttggagcgtgagctgttttgaaattaatttcagtcaa 32128190  T
Q  560 atatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctca 645  Q
    |||||||||||||||| |||||||||| |  |||||||||||  ||| |||||  ||||| |||||||||||||||||||||||||    
T  32128191 atatttgtttgtattcggtcaaaattgccagtgttgtctagtttccaatgtttattttaataattgtcagtgttgtctagtcctca 32128276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 460 - 641
Target Start/End: Complemental strand, 26814356 - 26814175
Alignment:
Q  460 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaa 559  Q
    ||||||||||||||||||| |||| ||||||| ||||| |||||||||| | ||||||   |||||||||||||||||||||||||||||||||| ||||    
T  26814356 ctgtatgtaaagttaagttccgaagagcatcttgatgaccggaaaaaagcgctgttggaggagttggagcgtgagctgttttgaaattaatttcagtcaa 26814257  T
Q  560 atatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtc 641  Q
    |||||||||||||||  ||||||||||||  |||||||||||||||| ||||| |||||| || ||| ||||||||||||||    
T  26814256 atatttgtttgtatttggtcaaaattgtcagtgttgtctagtccccaatgtttactttaataagtgttagtgttgtctagtc 26814175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 461 - 642
Target Start/End: Complemental strand, 36520702 - 36520521
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  36520702 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaa 36520603  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  36520602 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 36520521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 461 - 642
Target Start/End: Complemental strand, 22193486 - 22193305
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  || ||||||||||||||||||  |||||||||| |||||||    
T  22193486 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaatttggagcgtgagctgtttgaaaattaattttaatcaaa 22193387  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  22193386 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 22193305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 591 - 660
Target Start/End: Complemental strand, 26814186 - 26814117
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtgatagtccctagt 660  Q
    |||||||||||| ||| ||||| |||||| || |||||||||||||||||||||||||||||||||||||    
T  26814186 tgttgtctagtctccaatgtttactttaataaatgtcagtgttgtctagtcctcagtgatagtccctagt 26814117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 591 - 660
Target Start/End: Original strand, 32128300 - 32128369
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtgatagtccctagt 660  Q
    |||||||||||||| | ||||| |||||| || |||||||||||||||||||||||||||||||||||||    
T  32128300 tgttgtctagtccctaatgtttactttaataaatgtcagtgttgtctagtcctcagtgatagtccctagt 32128369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 591 - 642
Target Start/End: Complemental strand, 22193129 - 22193078
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  22193129 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 22193078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 591 - 642
Target Start/End: Complemental strand, 22193276 - 22193225
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  22193276 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 22193225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 155
Target Start/End: Original strand, 11599311 - 11599402
Alignment:
Q  62 ctaactgactttgcgcagttaggtacaagtagttatgattagttaaactaactctagttgattgggataactgaataacagattgtggaatctg 155  Q
    |||||||||||||  ||||||| ||||||||  | ||||||| ||||||| |||||||| | | || ||||||||||||||||| |||||||||    
T  11599311 ctaactgactttgttcagttagttacaagtaactctgattaggtaaactacctctagttaactagg-taactgaataacagatt-tggaatctg 11599402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 591 - 635
Target Start/End: Complemental strand, 22658666 - 22658622
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgt 635  Q
    |||||||||||||||| |||||||||||| |||| ||||||||||    
T  22658666 tgttgtctagtccccactgtttgctttaataattatcagtgttgt 22658622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 591 - 642
Target Start/End: Complemental strand, 22658624 - 22658573
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    ||||||||||||| |  |||||||||||| |||| |||||||||||||||||    
T  22658624 tgttgtctagtcctccctgtttgctttaataattatcagtgttgtctagtcc 22658573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 591 - 642
Target Start/End: Complemental strand, 22658705 - 22658654
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    |||||||||||||| | | |||||||||| | ||||||||||||||||||||    
T  22658705 tgttgtctagtcccgactatttgctttaatatttgtcagtgttgtctagtcc 22658654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 591 - 642
Target Start/End: Complemental strand, 22658744 - 22658693
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    |||||||||||||  | |||||||||||| |||| |||||||||||||||||    
T  22658744 tgttgtctagtcctgactgtttgctttaataattatcagtgttgtctagtcc 22658693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 591 - 643
Target Start/End: Complemental strand, 22658783 - 22658731
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcct 643  Q
    ||||||||| || | | |||||||||||| |||| ||||||||||||||||||    
T  22658783 tgttgtctactcacgactgtttgctttaataattatcagtgttgtctagtcct 22658731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 582 - 642
Target Start/End: Original strand, 32128252 - 32128312
Alignment:
Q  582 aattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    |||||||  ||||||||||||| || ||||| |||||| || ||| |||||||||||||||    
T  32128252 aattgtcagtgttgtctagtcctcaatgtttactttaataagtgttagtgttgtctagtcc 32128312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 4e-52; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 461 - 641
Target Start/End: Complemental strand, 18641477 - 18641297
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    ||||| |||||||||||| |||| ||||||||||||| || ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  18641477 tgtatataaagttaagttccgaagagcatctcgatgaccgaaaaaaagagttgttggagaagttggagcgtgagctgttttgaaattaatttcaatcaaa 18641378  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtc 641  Q
    |||||||||||||||  |||||||||||  |||||||||||  ||| |||||  ||||| |||||||| |||||| |||||    
T  18641377 tatttgtttgtattcgttcaaaattgtcagtgttgtctagtttccaatgtttagtttaataattgtcaatgttgtttagtc 18641297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 461 - 610
Target Start/End: Complemental strand, 8221382 - 8221233
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    ||||| |||||||||||| |||| ||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||  |||||||||| |||||||    
T  8221382 tgtatctaaagttaagttccgaagagcatctcgatgaccggaagaaagagctgttgggaaagttggagcgtgagctgtttgaaaattaattttaatcaaa 8221283  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgt 610  Q
    ||||||||||||||||||||||||| ||  |||||||||||||| |||||    
T  8221282 tatttgtttgtattcagtcaaaattatcagtgttgtctagtcccaagtgt 8221233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 461 - 642
Target Start/End: Complemental strand, 34840681 - 34840500
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  34840681 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaa 34840582  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  34840581 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 34840500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 460 - 642
Target Start/End: Original strand, 24917448 - 24917630
Alignment:
Q  460 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaa 559  Q
    ||||||||||||||||||| |||| ||||||| ||||| |||||||||||| ||||||   |||||||| || |||||||||||||||||||||| ||||    
T  24917448 ctgtatgtaaagttaagttccgaagagcatcttgatgaccggaaaaaagagctgttggaggagttggagagtaagctgttttgaaattaatttcagtcaa 24917547  T
Q  560 atatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    |||||||||||| ||  ||||||||||||  |||||||||||  ||| ||||| |||||| ||||| ||||||||||||||||    
T  24917548 atatttgtttgtgtttggtcaaaattgtcagtgttgtctagtatccaatgtttactttaataattgccagtgttgtctagtcc 24917630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 461 - 642
Target Start/End: Original strand, 17959161 - 17959342
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  |||||||||||||||||||||  |||||||||| |||||||    
T  17959161 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaattttaatcaaa 17959260  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  17959261 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 17959342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 461 - 642
Target Start/End: Complemental strand, 633940 - 633759
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  || ||||||||||||||||||  |||||||||| |||||||    
T  633940 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaatttggagcgtgagctgtttgaaaattaattttaatcaaa 633841  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  633840 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 633759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 461 - 642
Target Start/End: Original strand, 6378293 - 6378474
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  || ||||||||||||||||||  |||||||||| |||||||    
T  6378293 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaatttggagcgtgagctgtttgaaaattaattttaatcaaa 6378392  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  6378393 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 6378474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 467 - 563
Target Start/End: Complemental strand, 24114307 - 24114211
Alignment:
Q  467 taaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaatat 563  Q
    |||||||||||| |||| ||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||    
T  24114307 taaagttaagttccgaagagcatctcgatgaccggaagaaagagttgttggaaaagttggagcgtgagctgtttgaaaattaatttcaatcaaatat 24114211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 591 - 660
Target Start/End: Original strand, 24917618 - 24917687
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtgatagtccctagt 660  Q
    |||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||| |||||    
T  24917618 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcctcagtgatagtctctagt 24917687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 582 - 642
Target Start/End: Complemental strand, 8220924 - 8220864
Alignment:
Q  582 aattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    |||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8220924 aattgtcagtgttgtctagtccccagtgtttgctttaataattgtcagtgttgtctagtcc 8220864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 591 - 648
Target Start/End: Complemental strand, 8220954 - 8220897
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtg 648  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||| |||||    
T  8220954 tgttgtctagtccccagtgtttgctttagtaattgtcagtgttgtctagtccccagtg 8220897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 582 - 660
Target Start/End: Complemental strand, 18641317 - 18641239
Alignment:
Q  582 aattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtgatagtccctagt 660  Q
    ||||||| ||||||| |||||  || ||||| |||||| |||| |||||||||| ||||||||||||||||||||||||    
T  18641317 aattgtcaatgttgtttagtcttcaatgtttactttaataattatcagtgttgtatagtcctcagtgatagtccctagt 18641239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 591 - 648
Target Start/End: Complemental strand, 8220993 - 8220936
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtg 648  Q
    |||| |||||||||||||||||||||||| |||| ||||||||||||||||| |||||    
T  8220993 tgttctctagtccccagtgtttgctttaataattatcagtgttgtctagtccccagtg 8220936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 591 - 642
Target Start/End: Complemental strand, 633436 - 633385
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  633436 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 633385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 591 - 642
Target Start/End: Complemental strand, 633583 - 633532
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  633583 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 633532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 591 - 642
Target Start/End: Complemental strand, 633730 - 633679
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  633730 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 633679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 591 - 642
Target Start/End: Original strand, 6378503 - 6378554
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  6378503 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 6378554  T

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Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 591 - 642
Target Start/End: Original strand, 6378650 - 6378701
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    |||||||||||||||| ||||| |||||| ||||||||||||||||||||||    
T  6378650 tgttgtctagtccccaatgtttactttaataattgtcagtgttgtctagtcc 6378701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 591 - 642
Target Start/End: Complemental strand, 8221199 - 8221148
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||| ||||||    
T  8221199 tgttgtctaatccccagtgtttgctttaataattgtcagtgttgtttagtcc 8221148  T

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Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 582 - 641
Target Start/End: Complemental strand, 24114207 - 24114148
Alignment:
Q  582 aattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtc 641  Q
    |||||||  ||||||||||||||||  ||||||||||| ||||||||||| |||| ||||    
T  24114207 aattgtcagtgttgtctagtccccacagtttgctttaataattgtcagtggtgtcaagtc 24114148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 591 - 645
Target Start/End: Original strand, 17959330 - 17959386
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctca 645  Q
    |||||||||||||  |||||||||||||| |||| ||  ||||||||||||||||||    
T  17959330 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctca 17959386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 3e-50; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 461 - 642
Target Start/End: Original strand, 29617392 - 29617573
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    ||||| ||||||||||||  ||| ||||||||||||| || || |||||| ||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  29617392 tgtatctaaagttaagttctgaagagcatctcgatgaccgaaagaaagagctgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaa 29617491  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    |||||||||||||| |||||||||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  29617492 tatttgtttgtatttagtcaaaattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 29617573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 461 - 642
Target Start/End: Original strand, 30646727 - 30646908
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    ||||| ||||||||||||  ||| ||||||||||||| || |  |||||| |||||| ||||||||||||||||||||||  |||||||||| |||||||    
T  30646727 tgtatctaaagttaagttatgaagagcatctcgatgaccgaatgaaagagctgttggaaaagttggagcgtgagctgtttgaaaattaattttaatcaaa 30646826  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    ||||||||||||||||||||||||| ||  |||||||||||| | |||||||||||||| | ||||||||||||||||||||    
T  30646827 tatttgtttgtattcagtcaaaattatcagtgttgtctagtcacgagtgtttgctttaatatttgtcagtgttgtctagtcc 30646908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 461 - 642
Target Start/End: Complemental strand, 4579279 - 4579098
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||  |||||||||||||||||||||  |||||||||| |||||||    
T  4579279 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaaggagctgttggagaagttggagcgtgagctgtttgaaaattaattttaatcaaa 4579180  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | |||||||||||| | ||||||||||||||||||||    
T  4579179 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactgtttgctttaatatttgtcagtgttgtctagtcc 4579098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 461 - 642
Target Start/End: Original strand, 32974221 - 32974402
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  32974221 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaa 32974320  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||| | | |||||||||| | ||||||||||||||||||||    
T  32974321 tatttgtttgtattcagtcaacattatcagtgttgtctagtcccgactatttgctttaatatttgtcagtgttgtctagtcc 32974402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 461 - 642
Target Start/End: Complemental strand, 40890997 - 40890816
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  40890997 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaa 40890898  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    ||||||||||||||||||||| ||| ||  |||||||||||||  | |||||||||||| | ||||||||||||||||||||    
T  40890897 tatttgtttgtattcagtcaacattatcagtgttgtctagtcctgactgtttgctttaatatttgtcagtgttgtctagtcc 40890816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 461 - 642
Target Start/End: Complemental strand, 27944826 - 27944645
Alignment:
Q  461 tgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaa 560  Q
    ||||| ||||||||||   |||| ||||||||||||| ||||| || ||| ||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  27944826 tgtatctaaagttaagggacgaagagcatctcgatgaccggaagaatgagctgttggggaagttggagcgtgagctgtttgaaaattaattttaatcaaa 27944727  T
Q  561 tatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    ||||||||||||||||||||| ||| ||  || |||||||| || | |||||||||||| | ||||||||||||||||||||    
T  27944726 tatttgtttgtattcagtcaacattatcagtgctgtctagttccgactgtttgctttaatatttgtcagtgttgtctagtcc 27944645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 591 - 642
Target Start/End: Original strand, 27406303 - 27406354
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    ||||||||||||||  ||||||||||||| ||||||||||||||||||||||    
T  27406303 tgttgtctagtccctggtgtttgctttaataattgtcagtgttgtctagtcc 27406354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 593 - 642
Target Start/End: Complemental strand, 4579026 - 4578977
Alignment:
Q  593 ttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    |||||||||||||| |||||||||||| | ||||||||||||||||||||    
T  4579026 ttgtctagtccccaatgtttgctttaatatttgtcagtgttgtctagtcc 4578977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 533 - 574
Target Start/End: Original strand, 34918157 - 34918198
Alignment:
Q  533 agctgttttgaaattaatttcaatcaaatatttgtttgtatt 574  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  34918157 agctgtttggaaattaatttcaatcaaatatttgtttgtatt 34918198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 591 - 642
Target Start/End: Complemental strand, 27944534 - 27944483
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    ||||||||||||| || |||||||||||| | ||||||||||||||||||||    
T  27944534 tgttgtctagtcctcactgtttgctttaatatttgtcagtgttgtctagtcc 27944483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 602 - 642
Target Start/End: Original strand, 27406275 - 27406315
Alignment:
Q  602 ccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    |||||||||||||||||| |||| |||||||||||||||||    
T  27406275 ccccagtgtttgctttaataattatcagtgttgtctagtcc 27406315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 591 - 638
Target Start/End: Original strand, 29617728 - 29617775
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtcta 638  Q
    |||||||||||||| | |||||||||||| |||| |||||||||||||    
T  29617728 tgttgtctagtcccgactgtttgctttaataattatcagtgttgtcta 29617775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 591 - 645
Target Start/End: Complemental strand, 4579110 - 4579054
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctca 645  Q
    |||||||||||||  |||||||||||||| |||| ||  ||||||||||||||||||    
T  4579110 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctca 4579054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 591 - 644
Target Start/End: Complemental strand, 4578989 - 4578934
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtc--agtgttgtctagtcctc 644  Q
    |||||||||||||  |||||||||||||| |||| ||  |||||||||||||||||    
T  4578989 tgttgtctagtccgtagtgtttgctttaataattatcagagtgttgtctagtcctc 4578934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 99; Significance: 2e-48; HSPs: 3)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 460 - 638
Target Start/End: Complemental strand, 105066 - 104888
Alignment:
Q  460 ctgtatgtaaagttaagtttcgaaaagcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaa 559  Q
    ||||||||||||||||||| |||| ||||||| ||||| |||||||||| |  |||||   |||||||| ||||||||||||||||||||||||| ||||    
T  105066 ctgtatgtaaagttaagttccgaagagcatcttgatgaccggaaaaaagcgcggttggaggagttggagtgtgagctgttttgaaattaatttcagtcaa 104967  T
Q  560 atatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtcta 638  Q
    |||||||||||||||| ||||||||||||  ||||||||||| |||| |||||  ||||| ||||||||||||||||||    
T  104966 atatttgtttgtattcggtcaaaattgtcagtgttgtctagttcccaatgtttattttaataattgtcagtgttgtcta 104888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 591 - 660
Target Start/End: Complemental strand, 104857 - 104788
Alignment:
Q  591 tgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcctcagtgatagtccctagt 660  Q
    |||||||||||||||| ||||| |||||| || |||||||||||||||||||||||||||||||||||||    
T  104857 tgttgtctagtccccaatgtttactttaataaatgtcagtgttgtctagtcctcagtgatagtccctagt 104788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 582 - 642
Target Start/End: Complemental strand, 104905 - 104845
Alignment:
Q  582 aattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtcc 642  Q
    |||||||  ||||||||| |||||| ||||| |||||| || ||| |||||||||||||||    
T  104905 aattgtcagtgttgtctaatccccaatgtttactttaataagtgttagtgttgtctagtcc 104845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0658 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold0658
Description:

Target: scaffold0658; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 532 - 650
Target Start/End: Original strand, 7019 - 7136
Alignment:
Q  532 gagctgttttgaaattaatttcaatcaaatatttgtttgtattcagtcaaaattgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtg 631  Q
    ||||||||| ||||||||||||||||||||| |||||||||| | ||||||||||||  ||||||||||||||||||||||||||||| |||||||| ||    
T  7019 gagctgtttggaaattaatttcaatcaaatagttgtttgtat-cggtcaaaattgtcagtgttgtctagtccccagtgtttgctttaataattgtcaatg 7117  T
Q  632 ttgtctagtcctcagtgat 650  Q
    |||| ||||||||||||||    
T  7118 ttgtatagtcctcagtgat 7136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 61; Significance: 8e-26; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 485 - 641
Target Start/End: Original strand, 167228 - 167384
Alignment:
Q  485 agcatctcgatgatcggaaaaaagagttgttgggaaagttggagcgtgagctgttttgaaattaatttcaatcaaatatttgtttgtattcagtcaaaat 584  Q
    ||||| ||||||| ||||| ||| ||||||||| ||||||||  |  ||| ||||| |||||||||||||||||| |||||||||| |||| |||||| |    
T  167228 agcatttcgatgaccggaagaaaaagttgttggaaaagttgggccaagagttgtttggaaattaatttcaatcaagtatttgtttgcattcggtcaaact 167327  T
Q  585 tgtcgatgttgtctagtccccagtgtttgctttaacaattgtcagtgttgtctagtc 641  Q
    ||||  |  |||| ||||||||||||||||| ||| ||||||||||| |||| ||||    
T  167328 tgtcagtagtgtcaagtccccagtgtttgctctaataattgtcagtgatgtcaagtc 167384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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