View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2604_high_26 (Length: 351)
Name: NF2604_high_26
Description: NF2604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2604_high_26 |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 14 - 340
Target Start/End: Complemental strand, 36423000 - 36422674
Alignment:
| Q |
14 |
agaggctttcctaggaagtaatggttgaccatttttccatttgaggacaagttctttgtctggttcttctagaacaatggaattgagagtgtaactgttt |
113 |
Q |
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| T |
36423000 |
agaggctttcctaggaagtaatggttgaccatttttccatttgaggacaagttctttgtctggttcttctagaacaatggaattgagagtgtaactgttt |
36422901 |
T |
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| Q |
114 |
gaggacttaaaaagagggtgtgtcgagaggatcgcacgaactttgttgaattcttggatggttagagggtctaaagggtggcgaggttcatcggattcat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36422900 |
gaggacttaaaaagagggtgtgtcgagaggatcgcacgaactttgttgaattcttggatggttagagggtctaaagggtggcgaggttcatcggattcat |
36422801 |
T |
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| Q |
214 |
ggtttggttgttgatggcgagtggagaaggatggtttgtggattggatttgaagattgaaaacggttctttgaggtgcaccatccagagaagatgttgca |
313 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36422800 |
ggtttggttgttgacggcgagtggagaaggatggtttgtggattggatttgaagattgaaaacggttctttgaggtgcaccatccagagaagatgttgca |
36422701 |
T |
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| Q |
314 |
gtctagagcttctttgttgaatgatga |
340 |
Q |
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||||||||||||||||||||||||||| |
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| T |
36422700 |
gtctagagcttctttgttgaatgatga |
36422674 |
T |
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