View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2604_high_3 (Length: 662)
Name: NF2604_high_3
Description: NF2604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2604_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 17 - 422
Target Start/End: Complemental strand, 11189980 - 11189572
Alignment:
| Q |
17 |
aacatgttgatgctgtaagttctgatgagcttaggaagtgggacgctaaatttgtcaaggttgatcaagatacattcttgaaactcattttggctgctat |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||| ||||||||||||| |||||||| | |
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|
| T |
11189980 |
aacatgttgatgctgtaagttctgatgagcttaggaagtgggacgctgaatttgtccaggtcgatcaagatactctcttgaaactcatcttggctgcaag |
11189881 |
T |
|
| Q |
117 |
gtatttggacatcaagagtctatatgatcttggatgtatgactacagcaaacaacatcaaggacaagacaccggaggagattcgcaagtttttcaacatt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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|
| T |
11189880 |
gtatttggacatcaagagtctatatgatcttggatgtatgactacagcaaacaacatcaaggacaagacaccggaggagatttgcaagattttcaacatt |
11189781 |
T |
|
| Q |
217 |
aaggatgagta-aaccccgaggaaaaggaggaagttcgtcgcgaaaatagttgggcttttgactgaatctgtagtcaatttaatctccagtgtcttgatc |
315 |
Q |
| |
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||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||| || || |
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|
| T |
11189780 |
aaggatgagtacacccccgaggaaaaggaggaagttcgtcgcgaaaatagttgggcctttgaatgaatctgtagtcaatttaatttccagtgt-ttagtc |
11189682 |
T |
|
| Q |
316 |
aatttctctttgttatgcttcgttttatttatgaaagaactatataatgtactttttaacgattata----gaataaagttttatcgattattatatttt |
411 |
Q |
| |
|
||||||||| ||||||||||||||||| | |||||||||||||||| |||||||||||| ||||||| |||||||||||||| ||||||| | ||| |
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|
| T |
11189681 |
aatttctctgtgttatgcttcgttttagtcatgaaagaactatatagtgtactttttaatgattatatatggaataaagttttatttattattaca-ttt |
11189583 |
T |
|
| Q |
412 |
gacatcttata |
422 |
Q |
| |
|
||||||||||| |
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|
| T |
11189582 |
gacatcttata |
11189572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 17 - 552
Target Start/End: Complemental strand, 11179318 - 11178800
Alignment:
| Q |
17 |
aacatgttgatgctgtaagttctgatgagcttaggaagtgggacgctaaatttgtcaaggttgatcaagatacattcttgaaactcattttggctgctat |
116 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||| |||| |||| || ||||| ||||||| | |
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|
| T |
11179318 |
aacatgttgatgctgcaagttctgatgagcttgagaagtgggacgctgaatttgtcaaggttgatcaaaatactctcttcaatctcatcatggctgccaa |
11179219 |
T |
|
| Q |
117 |
gtatttggacatcaagagtctatatgatcttggatgtatgactacagcaaacaacatcaaggacaagacaccggaggagattcgcaagtttttcaacatt |
216 |
Q |
| |
|
||||| |||||||||| |||| |||||| || ||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||| |
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|
| T |
11179218 |
ctatttaaacatcaagagcctattggatcttacctgcatgactacaatggacaacatcaaggacaagacaccagaggagattcgcaagattttcaacatt |
11179119 |
T |
|
| Q |
217 |
aaggatgagtaaacccc-gaggaaaaggaggaagttcgtcgcgaaaatagttgggcttttgactgaatctgtagtcaatttaatctccagtgtcttgatc |
315 |
Q |
| |
|
||| |||| || ||||| |||||| ||||||||||||||||||||||||||||||||||||| ||| | ||| | | ||||| || || |
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|
| T |
11179118 |
aagaatgattacaccccagaggaagaggaggaagttcgtcgcgaaaatagttgggcttttgaatga--ttatag---aatgaatctgtag--------tc |
11179032 |
T |
|
| Q |
316 |
aatttctctttgttatgcttcgttttatttatgaaagaactatataatgtactttttaacgattatagaataaagttttatcgattattatattttgaca |
415 |
Q |
| |
|
|||||||||||||| |||| |||||||| |||||||||| || ||| | |||||||| |||||| ||||||||||||||||||||||||||||| ||| |
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|
| T |
11179031 |
tatttctctttgttaagcttggttttattcatgaaagaac--taaaattttctttttaatgattatggaataaagttttatcgattattatatttttaca |
11178934 |
T |
|
| Q |
416 |
tcttataatttctctttgacagtcatggatctgtcaagaatctattgagtcaaaattcgatcgcccatgaattagatttatatatgctcaatacttgtgt |
515 |
Q |
| |
|
||||||| || | | | | |||| |||||||||| |||||||||||||| |||||| || |||||| | ||||| ||| ||||||||| |||| | | |
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|
| T |
11178933 |
tcttatagttacaatct--ctgtcaaggatctgtcatgaatctattgagtcgaaattcaattgcccatcacttaga-ttaaatatgctcagcactttttt |
11178837 |
T |
|
| Q |
516 |
atgtgaattgattattattgtttaagggactatctat |
552 |
Q |
| |
|
|||| |||||||||||| ||||| ||||||||||| |
|
|
| T |
11178836 |
atgtctattgattattatgttttaatggactatctat |
11178800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 143 - 362
Target Start/End: Complemental strand, 11166202 - 11165983
Alignment:
| Q |
143 |
atcttggatgtatgactacagcaaacaacatcaaggacaagacaccggaggagattcgcaagtttttcaacattaaggatgagtaaacc-ccgaggaaaa |
241 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||| || ||| ||| |||||| |
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|
| T |
11166202 |
atcttgcatgtttgactacagcaaacaacatcaaggacaagacaccagaggagattcgcaagattttcaacattaagaatgattacacctccgcggaaaa |
11166103 |
T |
|
| Q |
242 |
ggaggaagttcgtcgcgaaaatagttgggcttttgactgaatctgtagtcaatttaatctccagtgtcttgatcaatttctctttgttatgcttcgtttt |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||| || ||||||||||| |||||||||| ||||| |
|
|
| T |
11166102 |
ggaggaagttcgtcgcgaaaatagttgggcctttgaatgaatctgtagtcaatttagtctccagtgt-ttcgtcaatttctctgtgttatgctttgtttt |
11166004 |
T |
|
| Q |
342 |
atttatgaaagaactatataa |
362 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
11166003 |
attcatgaaagaactatataa |
11165983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 391 - 635
Target Start/End: Complemental strand, 11165858 - 11165616
Alignment:
| Q |
391 |
ttttatcgattattatattttgacatcttataatttctctttgacagtcatggatctgtcaagaatctattgagtcaaaattcgatcgcccatgaattag |
490 |
Q |
| |
|
||||| |||||||| ||||||||||||||||| |||| | | ||||| ||| | |||| ||||| |||||||| ||||||||| |||||| ||| || |
|
|
| T |
11165858 |
ttttaacgattattgtattttgacatcttatagtttcaatct--cagtcgaggacccgtcatgaatcgattgagtcgaaattcgattgcccatcaataag |
11165761 |
T |
|
| Q |
491 |
atttatatatgctcaatacttgtgtatgtgaattgattattattgtttaagggactatctatcagatttatatattctaagtacttgtttatatttatgg |
590 |
Q |
| |
|
||||||||||||| | ||||||| ||||| ||||||||||||||||||||||||||||||| |||| |||||| ||| ||||||||||||||| ||| | |
|
|
| T |
11165760 |
atttatatatgcttagtacttgtttatgtctattgattattattgtttaagggactatctattagatatatataatcttagtacttgtttatatctatcg |
11165661 |
T |
|
| Q |
591 |
agtcgaaattggattgtccacactcatcaatttgaggtgtttttg |
635 |
Q |
| |
|
| ||||||||||||| ||||| |||||||||||| ||||||||| |
|
|
| T |
11165660 |
aatcgaaattggattttccacggtcatcaatttgatgtgtttttg |
11165616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 17 - 277
Target Start/End: Complemental strand, 11192558 - 11192294
Alignment:
| Q |
17 |
aacatgttgatgctgtaagttctgatgagcttaggaagtgggacgctaaatttgtcaaggttgatcaagatacattcttgaaactcattttggctgctat |
116 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||| |||| || ||||| | |||||||| |
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|
| T |
11192558 |
aacatgctgatgatgtaagttctgatgagcttaggaagtgggacgctgagtttgtccaggttgatcaagatactctcttcaatctcatctcggctgctaa |
11192459 |
T |
|
| Q |
117 |
gtatttggacatcaagagtctatatgatcttggatgtatgactacagcaaacaacatcaaggacaagacaccggaggagattcgcaagtttttcaacatt |
216 |
Q |
| |
|
||| | ||||||| ||||| | |||||| ||| |||||| ||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11192458 |
ctatctaaacatcaaaagtctgttggatcttacatgcatgactgcagcagacaatatcaaggacaagacaccggaggagattcgcaagattttcaacatt |
11192359 |
T |
|
| Q |
217 |
aag---gatgagtaaac-cccgaggaaaaggaggaagttcgtcgcgaaaatagttgggcttttga |
277 |
Q |
| |
|
||| ||||| || || ||||||||| |||||| || ||| | |||||||||||||||||||| |
|
|
| T |
11192358 |
aagaatgatgattacactcccgaggaagaggaggcagctcgctgtgaaaatagttgggcttttga |
11192294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 17 - 115
Target Start/End: Complemental strand, 11166304 - 11166206
Alignment:
| Q |
17 |
aacatgttgatgctgtaagttctgatgagcttaggaagtgggacgctaaatttgtcaaggttgatcaagatacattcttgaaactcattttggctgcta |
115 |
Q |
| |
|
||||||||||||||| |||||||||||| ||| ||||||||||||| |||||| |||| ||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
11166304 |
aacatgttgatgctgcaagttctgatgaacttgagaagtgggacgctgaatttgacaagattgatcaagatactctcttgaaactcatcttggctgcta |
11166206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 454 - 584
Target Start/End: Complemental strand, 11196922 - 11196793
Alignment:
| Q |
454 |
aatctattgagtcaaaattcgatcgcccatgaattagatttatatatgctcaatacttgtgtatgtgaattgattattattgtttaagggactatctatc |
553 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||| || ||||||||||| | |||| || ||||| ||||||||| ||||||| ||||||||| |
|
|
| T |
11196922 |
aatctattgagtcaaaattcgattgcccatcaattggagttatatatgcttagtact-gtctatgtctgaggattattatgttttaaggtactatctatt |
11196824 |
T |
|
| Q |
554 |
agatttatatattctaagtacttgtttatat |
584 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |
|
|
| T |
11196823 |
agatttatatattcgtagtacttgtttatat |
11196793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 11197761 - 11197527
Alignment:
| Q |
17 |
aacatgttgatgctgtaagttctgatgagcttaggaagtgggacgctaaatttgtcaaggttgatcaagatacattcttgaaactcattttggctgctat |
116 |
Q |
| |
|
|||||||| ||||| ||||| ||||| ||||||||| ||||||||| |||| ||| || ||||||||||||| | || | ||||| | | || ||| |
|
|
| T |
11197761 |
aacatgttaatgctaaaagttatgatgggcttaggaattgggacgctgaattcgtccag-ttgatcaagatactatgttcagtctcatctcgacttctaa |
11197663 |
T |
|
| Q |
117 |
gtatttggacatcaagagtctatatgatcttggatgtatgactacagcaaacaacatcaaggacaagacaccggaggagattcgcaagtttttcaacatt |
216 |
Q |
| |
|
||||||||||| |||||||| | |||||| || |||||| ||||| ||||||||||||||| ||| || |||||||| |||| ||||||||||| |
|
|
| T |
11197662 |
ctatttggacattaagagtcttttggatcttacattgatgactgcagcaggcaacatcaaggacaatacattggcggagattcacaagattttcaacatt |
11197563 |
T |
|
| Q |
217 |
aaggatgagtaaacc-ccgaggaaaaggaggaagtt |
251 |
Q |
| |
|
||| |||| || ||| ||| |||| ||||||||||| |
|
|
| T |
11197562 |
aagaatgattacaccaccggggaagaggaggaagtt |
11197527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 368 - 422
Target Start/End: Complemental strand, 11197485 - 11197431
Alignment:
| Q |
368 |
tttttaacgattatagaataaagttttatcgattattatattttgacatcttata |
422 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
11197485 |
tttttaatgattatagaataaagttttattgattattatattttgacatcttata |
11197431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 385 - 424
Target Start/End: Complemental strand, 11165986 - 11165947
Alignment:
| Q |
385 |
ataaagttttatcgattattatattttgacatcttataat |
424 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
11165986 |
ataaagttttattgattattatattttgacatcttataat |
11165947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 137
Target Start/End: Original strand, 11174747 - 11174844
Alignment:
| Q |
40 |
gatgagcttaggaagtgggacgctaaatttgtcaaggttgatcaagatacattcttgaaactcattttggctgctatgtatttggacatcaagagtct |
137 |
Q |
| |
|
||||| |||| ||||||||| ||| |||| ||| ||||||||||||| || |||| | ||||| |||||||||| |||||| ||||||||||||| |
|
|
| T |
11174747 |
gatgaacttaagaagtgggatgctgaattcgtccaggttgatcaagaaaccctcttcgatctcatcttggctgctaactatttgaacatcaagagtct |
11174844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 554 - 633
Target Start/End: Complemental strand, 11192114 - 11192035
Alignment:
| Q |
554 |
agatttatatattctaagtacttgtttatatttatggagtcgaaattggattgtccacactcatcaatttgaggtgtttt |
633 |
Q |
| |
|
|||||||||||| | ||||||| ||||||| ||| |||||||||||||||| || || | |||||||||| ||||||| |
|
|
| T |
11192114 |
agatttatatatgcatagtacttatttatatctatttagtcgaaattggattgcccgcattaatcaatttgatgtgtttt |
11192035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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