View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2604_high_30 (Length: 319)
Name: NF2604_high_30
Description: NF2604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2604_high_30 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 6616615 - 6616306
Alignment:
| Q |
1 |
taagctcactgctacgctaatgggtacattttgaactcatttgacgttgatttagtggttgatttaagactttaaagtgtgcatgtgagctcctatcaag |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
6616615 |
taagctcactgctacgctaatgggtaaattttgaactcatttgacgttaatttagtggttggcttaagactttaaagtgtgcatgtgagctcctctcaag |
6616516 |
T |
|
| Q |
101 |
atattagatttgatttctcttgaagctaatttcggtgactaagtccattcatatttatactttagttttgaatgaaa-cctcataagtagaaggtgggat |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||| || ||||||||||||||| ||| |
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| T |
6616515 |
atattagatttgatttctcttgaagctaatttcggtgactaagtcgattcatatttatactctaattttgaatgaaacccccataagtagaaggtgagat |
6616416 |
T |
|
| Q |
200 |
ttagccccttagaatagctagttcttaagttggatgccaaattnnnnnnntagttgaggcaaaacaacgtggcagtggcaacattccctgcctcaccaac |
299 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6616415 |
ttagcccctcagaatagctagttcttaagttggatgccaaattaaaaaaatagttgaggcaaaacaacgtggcagtggcaacattccctgcctcaccaac |
6616316 |
T |
|
| Q |
300 |
gtcttctgtg |
309 |
Q |
| |
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|||||||||| |
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|
| T |
6616315 |
gtcttctgtg |
6616306 |
T |
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