View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2604_high_51 (Length: 238)
Name: NF2604_high_51
Description: NF2604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2604_high_51 |
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| [»] scaffold0049 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 68 - 221
Target Start/End: Complemental strand, 1429434 - 1429281
Alignment:
| Q |
68 |
gtgtttttgagtctcttcaagcctacggtagaatggcttatccaacacacttgcaaagagagaattggtgagcgagaggatagagaaataagtgtagttg |
167 |
Q |
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| T |
1429434 |
gtgtttttgagtctcttcaagcctacggtagaatggcttatccaacacacttgcaaagagagacttggtgagcgagaggatagagaaataagtgtagttg |
1429335 |
T |
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| Q |
168 |
aaacttttgaattgtccttgctatgcatgccctgattgaattctttgagagtgg |
221 |
Q |
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| T |
1429334 |
aaacttttgaattgtccttgctacgcatgccctgactgaattctttgagagtgg |
1429281 |
T |
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Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 1429526 - 1429456
Alignment:
| Q |
1 |
ctattttttcaaacatatcccacattaacctaagccacattacaaccttaaaagacctctaaagtttgtgt |
71 |
Q |
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| T |
1429526 |
ctattttttcaaacatataccacattaacctaagccacattacaaccttaaaagacctctaaaatttgtgt |
1429456 |
T |
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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 9345828 - 9345782
Alignment:
| Q |
25 |
ttaacctaagccacattacaaccttaaaagacctctaaagtttgtgt |
71 |
Q |
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| T |
9345828 |
ttaacctaagccacgttataaccttaaaagacctctaaagtgtgtgt |
9345782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 34332435 - 34332495
Alignment:
| Q |
1 |
ctattttttcaaacatatcccacattaacctaagccacattacaaccttaaaagacctcta |
61 |
Q |
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| T |
34332435 |
ctattttttcaaatatatcccacattaacttaagtcacattataagtttaaaagatctcta |
34332495 |
T |
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Target: scaffold0049 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 40019 - 39953
Alignment:
| Q |
5 |
tttttcaaacatatcccacattaacctaagccacattacaaccttaaaagacctctaaagtttgtgt |
71 |
Q |
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| T |
40019 |
ttttccaaatatatcccaccttaacctaagccacgatataaccttgaaagacctctaaagtgtgtgt |
39953 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 2878777 - 2878843
Alignment:
| Q |
5 |
tttttcaaacatatcccacattaacctaagccacattacaaccttaaaagacctctaaagtttgtgt |
71 |
Q |
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| T |
2878777 |
ttttccaaatatatcccactttaacctaagccacgctataaccttgaaagacctttaaagtgtgtgt |
2878843 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 12676415 - 12676362
Alignment:
| Q |
18 |
tcccacattaacctaagccacattacaaccttaaaagacctctaaagtttgtgt |
71 |
Q |
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| T |
12676415 |
tcccaccttaacctaagccacgctataaccttgaaagacctctaaagtgtgtgt |
12676362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 16259279 - 16259231
Alignment:
| Q |
15 |
atatcccacattaacctaagccacattacaaccttaaaagacctctaaa |
63 |
Q |
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| T |
16259279 |
atatcccacaataacctaagacacgttacaactttgaaagacctctaaa |
16259231 |
T |
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