View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2604_high_55 (Length: 232)

Name: NF2604_high_55
Description: NF2604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2604_high_55
NF2604_high_55
[»] chr3 (7 HSPs)
chr3 (1-219)||(39571450-39571668)
chr3 (1-216)||(39581625-39581840)
chr3 (2-216)||(39568634-39568848)
chr3 (5-231)||(39585249-39585475)
chr3 (5-216)||(39565976-39566187)
chr3 (1-216)||(39575064-39575279)
chr3 (2-216)||(39561264-39561478)


Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 39571450 - 39571668
Alignment:
Q  1 cctcttattttgcttctccatctcaacaactgaagctactcttattttaatctccacttccacttctggtgtactgaacataccctctttgcactcactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39571450 cctcttattttgcttctccatctcaacaactgaagctactcttattttaatctccacttccacttctggtgtactgaacataccctctttgcactcactt 39571549  T
Q  101 ccactcaccaaatccattttcaaccannnnnnnaactccatgttttgtgtttcaagaatcaccttccatggaatgtcacctttgccaataagttgtgacc 200  Q
    ||||||||||||||||||||||||||       |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39571550 ccactcaccaaatccattttcaaccatttttttaactccatgttttgtgcttcaagaatcaccttccatggaatgtcacctttgccaataagttgtgacc 39571649  T
Q  201 cccatatcttcctttgtct 219  Q
    |||||||||| ||||||||    
T  39571650 cccatatctttctttgtct 39571668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 39581840 - 39581625
Alignment:
Q  1 cctcttattttgcttctccatctcaacaactgaagctactcttattttaatctccacttccacttctggtgtactgaacataccctctttgcactcactt 100  Q
    ||||||||||||| |||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||| | ||||||    
T  39581840 cctcttattttgcgtctccatctcagaaactgaagctacttttattttaatctccacttccacttctggtgttgtgaacataccctctttgtaatcactt 39581741  T
Q  101 ccactcaccaaatccattttcaaccannnnnnnaactccatgttttgtgtttcaagaatcaccttccatggaatgtcacctttgccaataagttgtgacc 200  Q
    ||||||||||||||||| ||||||||       |||||||||||||||| |||||||||||| ||||||||||| |||  ||| ||||||||||||||||    
T  39581740 ccactcaccaaatccatcttcaaccatttttttaactccatgttttgtgattcaagaatcactttccatggaatctcaaatttcccaataagttgtgacc 39581641  T
Q  201 cccatatcttcctttg 216  Q
    ||||||||||||||||    
T  39581640 cccatatcttcctttg 39581625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 2 - 216
Target Start/End: Original strand, 39568634 - 39568848
Alignment:
Q  2 ctcttattttgcttctccatctcaacaactgaagctactcttattttaatctccacttccacttctggtgtactgaacataccctctttgcactcacttc 101  Q
    |||||||| | ||| ||||||||| |||| ||||| |||||||||||||| ||||||||||||||||||||   ||||||| |||||||||| |||||||    
T  39568634 ctcttattcttcttttccatctcagcaaccgaagccactcttattttaatttccacttccacttctggtgttgggaacatagcctctttgcaatcacttc 39568733  T
Q  102 cactcaccaaatccattttcaaccannnnnnnaactccatgttttgtgtttcaagaatcaccttccatggaatgtcacctttgccaataagttgtgaccc 201  Q
     ||||||||||||||||||||||||       | |||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  39568734 tactcaccaaatccattttcaaccatttttttagctccatgttttgtgattcaagaatcactttccatggaatctcacctttgccaataagttgtgaccc 39568833  T
Q  202 ccatatcttcctttg 216  Q
    ||| |||||||||||    
T  39568834 ccacatcttcctttg 39568848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 5 - 231
Target Start/End: Complemental strand, 39585475 - 39585249
Alignment:
Q  5 ttattttgcttctccatctcaacaactgaagctactcttattttaatctccacttccacttctggtgtactgaacataccctctttgcactcacttccac 104  Q
    |||||||  |||||||||||| |||| ||||  ||| ||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||||||    
T  39585475 ttatttttgttctccatctcagcaaccgaaggaacttttattttaatctccacttccacttctgttgttgtgaacataccctctttgcaatcacttccac 39585376  T
Q  105 tcaccaaatccattttcaaccannnnnnnaactccatgttttgtgtttcaagaatcaccttccatggaatgtcacctttgccaataagttgtgaccccca 204  Q
    |||| || ||||||||||||||       |||||||||||||||| |||||||||||| ||||||||||| |||||||| ||||||||||||||||||||    
T  39585375 tcacaaattccattttcaaccatttttttaactccatgttttgtgattcaagaatcactttccatggaatctcacctttcccaataagttgtgaccccca 39585276  T
Q  205 tatcttcctttgtctctgctcctccac 231  Q
     ||||||||||| ||| ||||| ||||    
T  39585275 catcttcctttgcctcagctccaccac 39585249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 5 - 216
Target Start/End: Original strand, 39565976 - 39566187
Alignment:
Q  5 ttattttgcttctccatctcaacaactgaagctactcttattttaatctccacttccacttctggtgtactgaacataccctctttgcactcacttccac 104  Q
    ||||||||||||||||||||| |||| || |||||| |||||||||||||||||||||||||||| ||  ||||||||||||||||| | ||||| ||||    
T  39565976 ttattttgcttctccatctcagcaaccgaggctacttttattttaatctccacttccacttctggcgttatgaacataccctctttgaaatcactgccac 39566075  T
Q  105 tcaccaaatccattttcaaccannnnnnnaactccatgttttgtgtttcaagaatcaccttccatggaatgtcacctttgccaataagttgtgaccccca 204  Q
    ||||||||||||| ||||||||       ||||||||||||| || |||||||||||| ||||||||||| |||| ||| ||||||||||||||||||||    
T  39566076 tcaccaaatccatcttcaaccatttttttaactccatgttttttgattcaagaatcactttccatggaatctcacatttcccaataagttgtgaccccca 39566175  T
Q  205 tatcttcctttg 216  Q
     |||||||||||    
T  39566176 catcttcctttg 39566187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 39575279 - 39575064
Alignment:
Q  1 cctcttattttgcttctccatctcaacaactgaagctactcttattttaatctccacttccacttctggtgtactgaacataccctctttgcactcactt 100  Q
    ||||||||||||||||||||||||  |||| ||||||||| |||||||||||||||||||||| |  || ||  |||| |||||||||||||| ||||||    
T  39575279 cctcttattttgcttctccatctccgcaaccgaagctacttttattttaatctccacttccacctacggcgttatgaatataccctctttgcaatcactt 39575180  T
Q  101 ccactcaccaaatccattttcaaccannnnnnnaactccatgttttgtgtttcaagaatcaccttccatggaatgtcacctttgccaataagttgtgacc 200  Q
    ||||||| ||||||||| ||||||||       |||||||||||||||| |||||||||||| ||||||||||| |||||||| ||||||||||||||||    
T  39575179 ccactcaacaaatccatcttcaaccatttttttaactccatgttttgtgattcaagaatcactttccatggaatctcaccttttccaataagttgtgacc 39575080  T
Q  201 cccatatcttcctttg 216  Q
    |||| |||||||||||    
T  39575079 cccacatcttcctttg 39575064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 2 - 216
Target Start/End: Original strand, 39561264 - 39561478
Alignment:
Q  2 ctcttattttgcttctccatctcaacaactgaagctactcttattttaatctccacttccacttctggtgtactgaacataccctctttgcactcacttc 101  Q
    |||||||| | ||| ||||||||| |||| ||||  |||||||||||||| ||||||||||||||||||||   ||||||| |||||||||| |||||||    
T  39561264 ctcttattcttcttttccatctcagcaaccgaagtcactcttattttaatttccacttccacttctggtgttgggaacatagcctctttgcaatcacttc 39561363  T
Q  102 cactcaccaaatccattttcaaccannnnnnnaactccatgttttgtgtttcaagaatcaccttccatggaatgtcacctttgccaataagttgtgaccc 201  Q
    ||||||| ||||  || ||||||||       |||||||||||||||| |||||||||||| ||||||||||| |||||||| |||||||||||||||||    
T  39561364 cactcactaaatatatcttcaaccatttttttaactccatgttttgtgattcaagaatcactttccatggaatctcaccttttccaataagttgtgaccc 39561463  T
Q  202 ccatatcttcctttg 216  Q
    |||||||||||||||    
T  39561464 ccatatcttcctttg 39561478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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