View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2604_high_56 (Length: 231)

Name: NF2604_high_56
Description: NF2604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2604_high_56
NF2604_high_56
[»] chr3 (29 HSPs)
chr3 (11-216)||(10184125-10184330)
chr3 (11-216)||(10031886-10032091)
chr3 (11-216)||(10260581-10260786)
chr3 (11-216)||(10580484-10580689)
chr3 (11-216)||(10663409-10663614)
chr3 (13-216)||(9838744-9838947)
chr3 (13-216)||(9849622-9849825)
chr3 (11-216)||(10126811-10127016)
chr3 (11-216)||(10363779-10363984)
chr3 (11-216)||(11769117-11769322)
chr3 (11-216)||(10088673-10088878)
chr3 (13-213)||(10434027-10434227)
chr3 (11-216)||(10195556-10195761)
chr3 (13-216)||(10375828-10376031)
chr3 (11-205)||(10077163-10077357)
chr3 (13-216)||(11131009-11131212)
chr3 (13-216)||(11148837-11149040)
chr3 (13-216)||(10889189-10889392)
chr3 (13-216)||(11160000-11160203)
chr3 (13-216)||(8861169-8861372)
chr3 (52-155)||(10527281-10527384)
chr3 (13-144)||(13160935-13161066)
chr3 (13-144)||(13170986-13171117)
chr3 (13-144)||(13332859-13332990)
chr3 (13-144)||(13344044-13344175)
chr3 (13-144)||(13289620-13289751)
chr3 (10-155)||(10517408-10517553)
chr3 (52-155)||(11782025-11782128)
chr3 (80-155)||(10500500-10500575)
[»] chr2 (1 HSPs)
chr2 (11-216)||(26906780-26906985)
[»] scaffold0002 (2 HSPs)
scaffold0002 (13-144)||(135871-136002)
scaffold0002 (13-144)||(145922-146053)
[»] chr8 (2 HSPs)
chr8 (52-155)||(11484961-11485064)
chr8 (56-155)||(44957735-44957834)
[»] chr6 (1 HSPs)
chr6 (52-142)||(31679755-31679845)
[»] chr4 (3 HSPs)
chr4 (52-155)||(17852966-17853069)
chr4 (53-111)||(7128998-7129056)
chr4 (55-111)||(7482082-7482138)


Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 11 - 216
Target Start/End: Complemental strand, 10184330 - 10184125
Alignment:
Q  11 ataatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggcagtttttc 110  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  10184330 ataatatcaaaatcctcggacacacaagcccacgccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgagcaagggtagtttttc 10184231  T
Q  111 ctaaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtatctctctgtgacagcaacatgttcattattgtctctttgtcatcctt 210  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  10184230 ctaaacctcccatgcccaaaattgcaacaacacctatagcattatgggttgtgtctctctgtgacagcaacatgttcattattgtctctttgtcatcctt 10184131  T
Q  211 cctacc 216  Q
    ||||||    
T  10184130 cctacc 10184125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 11 - 216
Target Start/End: Complemental strand, 10032091 - 10031886
Alignment:
Q  11 ataatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggcagtttttc 110  Q
    ||||||||||||||||||||||||||||||||  || ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10032091 ataatatcaaaatcctcagacacacaagcccaggccttcaaatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttc 10031992  T
Q  111 ctaaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtatctctctgtgacagcaacatgttcattattgtctctttgtcatcctt 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||| |||||||||||||||||||||||||||||||||||    
T  10031991 ctaaacctcccatgcccaaaattgcaacaacacctatattattatgggatgcgtctctctgtgatagcaacatgttcattattgtctctttgtcatcctt 10031892  T
Q  211 cctacc 216  Q
    ||||||    
T  10031891 cctacc 10031886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 11 - 216
Target Start/End: Complemental strand, 10260786 - 10260581
Alignment:
Q  11 ataatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggcagtttttc 110  Q
    ||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  10260786 ataatatcaaaatcctcagacacacaagcccacgccttcatgtcaaaatgttgttgaacttctttatcattgtaaacaagttgagcaagggtagtttttc 10260687  T
Q  111 ctaaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtatctctctgtgacagcaacatgttcattattgtctctttgtcatcctt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  10260686 ctaaacctcccatgcccaaaattgcaacaacacctatattattgttggttgtttctctctgtgatagcaacatgttcattattgtctctttgtcatcctt 10260587  T
Q  211 cctacc 216  Q
    ||||||    
T  10260586 cctacc 10260581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 11 - 216
Target Start/End: Complemental strand, 10580689 - 10580484
Alignment:
Q  11 ataatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggcagtttttc 110  Q
    ||||||||||||||||||||||||||| ||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10580689 ataatatcaaaatcctcagacacacaaacccacgccttcatgtcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttc 10580590  T
Q  111 ctaaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtatctctctgtgacagcaacatgttcattattgtctctttgtcatcctt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||| |||||||||||||||||||||||||||||||||||    
T  10580589 ctaaacctcccatgcccaaaattgcaacaacacctatattattatggattgtgtttctctgtgatagcaacatgttcattattgtctctttgtcatcctt 10580490  T
Q  211 cctacc 216  Q
    ||||||    
T  10580489 cctacc 10580484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 11 - 216
Target Start/End: Complemental strand, 10663614 - 10663409
Alignment:
Q  11 ataatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggcagtttttc 110  Q
    ||||||||||||||||||||||||||| ||||  || ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10663614 ataatatcaaaatcctcagacacacaaacccatgccttcaaatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttc 10663515  T
Q  111 ctaaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtatctctctgtgacagcaacatgttcattattgtctctttgtcatcctt 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||    
T  10663514 ctaaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtgtctctctgtgatagcaacatgttcattattgtctctttgtcaccctt 10663415  T
Q  211 cctacc 216  Q
    ||||||    
T  10663414 cctacc 10663409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 13 - 216
Target Start/End: Complemental strand, 9838947 - 9838744
Alignment:
Q  13 aatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggcagtttttcct 112  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  9838947 aatatcaaaatcctcagacacacaagcccacgccctcatatcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaagggtagtttttcct 9838848  T
Q  113 aaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtatctctctgtgacagcaacatgttcattattgtctctttgtcatccttcc 212  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || || |||||||||||||||||||||||||||||| ||||||    
T  9838847 aaacctcccatgcccaaaattgcaacaacacctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctctttgtcacccttcc 9838748  T
Q  213 tacc 216  Q
    ||||    
T  9838747 tacc 9838744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 13 - 216
Target Start/End: Complemental strand, 9849825 - 9849622
Alignment:
Q  13 aatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggcagtttttcct 112  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  9849825 aatatcaaaatcctcagacacacaagcccacgccctcatatcaaaatgttgttgaacttcttcatcattgtaaacaagttgggcaagggtagtttttcct 9849726  T
Q  113 aaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtatctctctgtgacagcaacatgttcattattgtctctttgtcatccttcc 212  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || || |||||||||||||||||||||||||||||| ||||||    
T  9849725 aaacctcccatgcccaaaattgcaacaacacctatattgttatgggttgtgtctctttgagatagcaacatgttcattattgtctctttgtcacccttcc 9849626  T
Q  213 tacc 216  Q
    ||||    
T  9849625 tacc 9849622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 11 - 216
Target Start/End: Complemental strand, 10127016 - 10126811
Alignment:
Q  11 ataatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggcagtttttc 110  Q
    ||||||||||||||||||||||||||| ||||  || ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10127016 ataatatcaaaatcctcagacacacaaacccatgccttcaaatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttc 10126917  T
Q  111 ctaaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtatctctctgtgacagcaacatgttcattattgtctctttgtcatcctt 210  Q
    | |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| || |||||||||||||||||||||||||||||||||||    
T  10126916 ccaaacctcccatgcccaaaattgcaacaacacctatattattatgggatgtgtctctctgagatagcaacatgttcattattgtctctttgtcatcctt 10126817  T
Q  211 cctacc 216  Q
    ||||||    
T  10126816 cctacc 10126811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 11 - 216
Target Start/End: Original strand, 10363779 - 10363984
Alignment:
Q  11 ataatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggcagtttttc 110  Q
    |||||||||||||||||||| |||||| ||||  || ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10363779 ataatatcaaaatcctcagagacacaaacccatgccttcaaatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttc 10363878  T
Q  111 ctaaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtatctctctgtgacagcaacatgttcattattgtctctttgtcatcctt 210  Q
    |||||||||||||||| |||||||||||||||||||||||||| | |||||| ||||||| ||| |||||||||||||||||||||||||||||||||||    
T  10363879 ctaaacctcccatgcctaaaattgcaacaacacctatattattgtcggttgtttctctctttgaaagcaacatgttcattattgtctctttgtcatcctt 10363978  T
Q  211 cctacc 216  Q
    ||||||    
T  10363979 cctacc 10363984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 11 - 216
Target Start/End: Complemental strand, 11769322 - 11769117
Alignment:
Q  11 ataatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggcagtttttc 110  Q
    ||||||||||||||||||||||| ||||||||  || ||| |||||||| |||||||||||||||||||||||| |||||||| ||||||| ||||||||    
T  11769322 ataatatcaaaatcctcagacacgcaagcccatgccttcaaatcaaaatattgttgaacttctttatcattgtagacaagttgagcaagggtagtttttc 11769223  T
Q  111 ctaaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtatctctctgtgacagcaacatgttcattattgtctctttgtcatcctt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||| |||    
T  11769222 ctaaacctcccatgcccaaaattgcaacaacacctatattattatggattgtgtctctctgtgatagcaacatgttcattattgtctctttgtcattctt 11769123  T
Q  211 cctacc 216  Q
    ||||||    
T  11769122 cctacc 11769117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 11 - 216
Target Start/End: Complemental strand, 10088878 - 10088673
Alignment:
Q  11 ataatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggcagtttttc 110  Q
    ||||||||||||||||||||||||||| ||||  || ||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10088878 ataatatcaaaatcctcagacacacaaacccatgccttcaaatcaaaatggtgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttc 10088779  T
Q  111 ctaaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtatctctctgtgacagcaacatgttcattattgtctctttgtcatcctt 210  Q
    |||||||||||||||| |||||||||||||||||||||||||| | |||||| ||||||| ||| |||||||||||||||||||||||||| ||||||||    
T  10088778 ctaaacctcccatgcctaaaattgcaacaacacctatattattgtcggttgtttctctctttgaaagcaacatgttcattattgtctctttatcatcctt 10088679  T
Q  211 cctacc 216  Q
    ||||||    
T  10088678 cctacc 10088673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 13 - 213
Target Start/End: Original strand, 10434027 - 10434227
Alignment:
Q  13 aatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggcagtttttcct 112  Q
    |||||||||||||| |||||||||||||||  || ||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  10434027 aatatcaaaatcctgagacacacaagcccaggccttcaaatcaaaatggtgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttcct 10434126  T
Q  113 aaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtatctctctgtgacagcaacatgttcattattgtctctttgtcatccttcc 212  Q
    |||||||||||||| |||||||||||||||||||| |||||||| ||||| | ||||||||| |||||||||||||||||||||||||||||||||||||    
T  10434127 aaacctcccatgcctaaaattgcaacaacacctatcttattatgagttgtgtttctctgtgatagcaacatgttcattattgtctctttgtcatccttcc 10434226  T
Q  213 t 213  Q
    |    
T  10434227 t 10434227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 11 - 216
Target Start/End: Complemental strand, 10195761 - 10195556
Alignment:
Q  11 ataatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggcagtttttc 110  Q
    ||||||||||||||||||||||||||| ||||  || ||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10195761 ataatatcaaaatcctcagacacacaaacccatgccttcaaatcaaaatggtgttgaacttctttatcattgtaaacaagttgggcaagggtagtttttc 10195662  T
Q  111 ctaaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtatctctctgtgacagcaacatgttcattattgtctctttgtcatcctt 210  Q
    |||||||||||||||| |||||||||||||||||||||||||| | |||||| ||||||| ||| |||||||||||||||||||||||||| ||||||||    
T  10195661 ctaaacctcccatgcctaaaattgcaacaacacctatattattgtcggttgtttctctctttgaaagcaacatgttcattattgtctctttatcatcctt 10195562  T
Q  211 cctacc 216  Q
     |||||    
T  10195561 tctacc 10195556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 13 - 216
Target Start/End: Original strand, 10375828 - 10376031
Alignment:
Q  13 aatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggcagtttttcct 112  Q
    ||||||||||||||||||||||||||||||  || ||| |||||||||||||||||||| || |||||||||||||||||| ||||||| ||||||||||    
T  10375828 aatatcaaaatcctcagacacacaagcccatgccttcaaatcaaaatgttgttgaactttttcatcattgtaaacaagttgtgcaagggtagtttttcct 10375927  T
Q  113 aaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtatctctctgtgacagcaacatgttcattattgtctctttgtcatccttcc 212  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||| ||| ||| ||| ||||||||||||||||| || ||||| ||||||||||    
T  10375928 aaacctcccatgcccaaaattgcaacaacacctatattattatgcgatgtgtctgtctctgatagcaacatgttcattatagtgtctttatcatccttcc 10376027  T
Q  213 tacc 216  Q
    ||||    
T  10376028 tacc 10376031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 11 - 205
Target Start/End: Complemental strand, 10077357 - 10077163
Alignment:
Q  11 ataatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggcagtttttc 110  Q
    ||||||||||||||||||||||||||||||||  ||  || ||||||||| | | ||||||  | |||||||||||||||||||||||||| ||||||||    
T  10077357 ataatatcaaaatcctcagacacacaagcccatgcctgcaaatcaaaatggtatcgaactttataatcattgtaaacaagttgggcaagggtagtttttc 10077258  T
Q  111 ctaaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtatctctctgtgacagcaacatgttcattattgtctctttgtca 205  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||    |  ||  ||| ||||||||||||||||||||||||||||||    
T  10077257 ctaaacctcccatgcccaaaattgcaacaacacctatcttattatgggttccgcccatccctgatagcaacatgttcattattgtctctttgtca 10077163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 216
Target Start/End: Original strand, 11131009 - 11131212
Alignment:
Q  13 aatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggcagtttttcct 112  Q
    ||||||||||||||| || |||||||||||  |  | | |||||| |||| |||||||| || |||||||||| ||| ||| |||||||  ||||||||     
T  11131009 aatatcaaaatcctccgatacacaagcccatgctttgagatcaaagtgttcttgaactttttcatcattgtaagcaatttgtgcaagggttgtttttccg 11131108  T
Q  113 aaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtatctctctgtgacagcaacatgttcattattgtctctttgtcatccttcc 212  Q
    | ||||||||| || ||||||||||||||||| ||||| |||| | | ||    |||| ||| |||||||||||| |||||||||||||||||||||| |    
T  11131109 acacctcccatacctaaaattgcaacaacaccgatattgttattgctagtgctgctctttgatagcaacatgttcgttattgtctctttgtcatcctttc 11131208  T
Q  213 tacc 216  Q
    ||||    
T  11131209 tacc 11131212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 216
Target Start/End: Original strand, 11148837 - 11149040
Alignment:
Q  13 aatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggcagtttttcct 112  Q
    ||||||||||||||| || |||||||||||  |  | | |||||| |||| |||||||| || |||||||||| ||| ||| |||||||  ||||||||     
T  11148837 aatatcaaaatcctccgatacacaagcccatgctttgagatcaaagtgttcttgaactttttcatcattgtaagcaatttgtgcaagggttgtttttccg 11148936  T
Q  113 aaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtatctctctgtgacagcaacatgttcattattgtctctttgtcatccttcc 212  Q
    | ||||||||| || ||||||||||||||||| ||||| |||| | | ||    |||| ||| |||||||||||| ||||| |||||||||||||||| |    
T  11148937 acacctcccatacctaaaattgcaacaacaccgatattgttattgctagtgctgctctttgatagcaacatgttcgttattatctctttgtcatcctttc 11149036  T
Q  213 tacc 216  Q
    ||||    
T  11149037 tacc 11149040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 216
Target Start/End: Complemental strand, 10889392 - 10889189
Alignment:
Q  13 aatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggcagtttttcct 112  Q
    |||||||||||||||||| |||||||||||  |  | | |||||| || | |||||||| || |||||||||||||||||| ||||| |  ||||| ||     
T  10889392 aatatcaaaatcctcagatacacaagcccatgctttgagatcaaagtgctcttgaactttttcatcattgtaaacaagttgtgcaagtgtcgttttaccg 10889293  T
Q  113 aaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtatctctctgtgacagcaacatgttcattattgtctctttgtcatccttcc 212  Q
    | ||||||||| || ||||||||||||||||| ||||| ||||   | ||    |||| ||| |||||||||||||||||||||||||| ||||| || |    
T  10889292 acacctcccatacctaaaattgcaacaacaccgatattgttattcctagtgctgctctctgatagcaacatgttcattattgtctctttatcatcatttc 10889193  T
Q  213 tacc 216  Q
    ||||    
T  10889192 tacc 10889189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 216
Target Start/End: Original strand, 11160000 - 11160203
Alignment:
Q  13 aatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggcagtttttcct 112  Q
    |||||||||||||||||| |||||||||||  |  | | ||||||||| | |||||||| || || ||||||||||||||| ||||| |  ||||| ||     
T  11160000 aatatcaaaatcctcagatacacaagcccatgctttgaaatcaaaatgatcttgaactttttcattattgtaaacaagttgtgcaagtgtcgttttaccg 11160099  T
Q  113 aaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtatctctctgtgacagcaacatgttcattattgtctctttgtcatccttcc 212  Q
    | ||||||||| || |||||||||||||| |||||||| |||| |   ||    |||| ||| |||||||||||||||||||||||||| ||||| || |    
T  11160100 acacctcccatacctaaaattgcaacaacgcctatattgttattgccagtgctactctctgatagcaacatgttcattattgtctctttatcatcatttc 11160199  T
Q  213 tacc 216  Q
    ||||    
T  11160200 tacc 11160203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 216
Target Start/End: Complemental strand, 8861372 - 8861169
Alignment:
Q  13 aatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggcagtttttcct 112  Q
    ||||||||||||||| || |||||||||||  |  | | |||||| || | |||||||| || |||||||||||||||||| ||||| |  ||||| ||     
T  8861372 aatatcaaaatcctctgatacacaagcccatgctttgagatcaaagtgctcttgaactttttcatcattgtaaacaagttgtgcaagtgtcgttttaccg 8861273  T
Q  113 aaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtatctctctgtgacagcaacatgttcattattgtctctttgtcatccttcc 212  Q
    | ||||||||| || ||||||||||||||||| ||||| ||||   | ||    |||| ||| |||||||||||||||| ||||||||| ||||| || |    
T  8861272 acacctcccatacctaaaattgcaacaacaccgatattgttattcctagtgctgctctctgatagcaacatgttcattactgtctctttatcatcatttc 8861173  T
Q  213 tacc 216  Q
    ||||    
T  8861172 tacc 8861169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 52 - 155
Target Start/End: Complemental strand, 10527384 - 10527281
Alignment:
Q  52 atcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggcagtttttcctaaacctcccatgcccaaaattgcaacaacacctatatta 151  Q
    ||||||||| |||| ||| | || |||||||||||||||||| |||||||  ||||| || | ||||||||| ||||| |||||||||||||||| ||||    
T  10527384 atcaaaatggtgttcaaccttttcatcattgtaaacaagttgtgcaagggttgttttaccgacacctcccatacccaagattgcaacaacacctaaatta 10527285  T
Q  152 ttat 155  Q
    ||||    
T  10527284 ttat 10527281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 144
Target Start/End: Complemental strand, 13161066 - 13160935
Alignment:
Q  13 aatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggcagtttttcct 112  Q
    |||||| |||||||| || |||||| |||| ||  ||| ||||||||| | |||||||||||||||||| |||| |||||||||||| |  ||||| ||     
T  13161066 aatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagagtggttttgcca 13160967  T
Q  113 aaacctcccatgcccaaaattgcaacaacacc 144  Q
    | ||| ||||| |||||||||||||| |||||    
T  13160966 acaccgcccatacccaaaattgcaaccacacc 13160935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 144
Target Start/End: Complemental strand, 13171117 - 13170986
Alignment:
Q  13 aatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggcagtttttcct 112  Q
    |||||| |||||||| || |||||| |||| ||  ||| ||||||||| | |||||||||||||||||| |||| |||||||||||| |  ||||| ||     
T  13171117 aatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagagtggttttgcca 13171018  T
Q  113 aaacctcccatgcccaaaattgcaacaacacc 144  Q
    | ||| ||||| |||||||||||||| |||||    
T  13171017 acaccgcccatacccaaaattgcaaccacacc 13170986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 144
Target Start/End: Complemental strand, 13332990 - 13332859
Alignment:
Q  13 aatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggcagtttttcct 112  Q
    |||||| |||||||| || |||||| |||| ||  ||| ||||||||| | |||||||||||||||||| |||| |||||||||||| |  ||||| ||     
T  13332990 aatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagagtggttttgcca 13332891  T
Q  113 aaacctcccatgcccaaaattgcaacaacacc 144  Q
    | ||| ||||| |||||||||||||| |||||    
T  13332890 acaccgcccatacccaaaattgcaaccacacc 13332859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 144
Target Start/End: Complemental strand, 13344175 - 13344044
Alignment:
Q  13 aatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggcagtttttcct 112  Q
    |||||| |||||||| || |||||| |||| ||  ||| ||||||||| | |||||||||||||||||| |||| |||||||||||| |  ||||| ||     
T  13344175 aatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagagtggttttgcca 13344076  T
Q  113 aaacctcccatgcccaaaattgcaacaacacc 144  Q
    | ||| ||||| |||||||||||||| |||||    
T  13344075 acaccgcccatacccaaaattgcaaccacacc 13344044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 144
Target Start/End: Complemental strand, 13289751 - 13289620
Alignment:
Q  13 aatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggcagtttttcct 112  Q
    |||||| |||||||| || |||||| |||| ||  ||| ||||||||| | |||||||||||||||||| |||| |||||||||||| |  ||||| ||     
T  13289751 aatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagagtggttttgcca 13289652  T
Q  113 aaacctcccatgcccaaaattgcaacaacacc 144  Q
    | ||| ||||| ||||||||||| || |||||    
T  13289651 acaccgcccatacccaaaattgcgaccacacc 13289620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 10 - 155
Target Start/End: Complemental strand, 10517553 - 10517408
Alignment:
Q  10 aataatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggcagttttt 109  Q
    ||||| ||||||||||||||| |||||| ||||  |  | | |||||||||||||| ||||| |  ||||||||||||||  || |||||||  |||||     
T  10517553 aataacatcaaaatcctcagatacacaaacccaggctttgaaatcaaaatgttgttcaacttttgcatcattgtaaacaaactgtgcaagggtcgtttta 10517454  T
Q  110 cctaaacctcccatgcccaaaattgcaacaacacctatattattat 155  Q
    || |  |||||||| |||| ||||||| ||||||||| ||||||||    
T  10517453 ccgacgcctcccatacccacaattgcagcaacacctaaattattat 10517408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 52 - 155
Target Start/End: Original strand, 11782025 - 11782128
Alignment:
Q  52 atcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggcagtttttcctaaacctcccatgcccaaaattgcaacaacacctatatta 151  Q
    |||||||||||||| |||||    ||||||||||||||| || |||||||  ||||| || |  |||||||| ||||||||||| |||||||||| ||||    
T  11782025 atcaaaatgttgttcaactttcacatcattgtaaacaagctgtgcaagggtcgttttaccgacgcctcccatacccaaaattgcgacaacacctaaatta 11782124  T
Q  152 ttat 155  Q
    ||||    
T  11782125 ttat 11782128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 155
Target Start/End: Complemental strand, 10500575 - 10500500
Alignment:
Q  80 ttgtaaacaagttgggcaagggcagtttttcctaaacctcccatgcccaaaattgcaacaacacctatattattat 155  Q
    |||||||||||||| ||||| |  ||||| || |  |||||||| |||||||||||||||||||||| ||||||||    
T  10500575 ttgtaaacaagttgagcaagtgttgttttaccgacgcctcccatacccaaaattgcaacaacacctaaattattat 10500500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 11 - 216
Target Start/End: Complemental strand, 26906985 - 26906780
Alignment:
Q  11 ataatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggcagtttttc 110  Q
    ||||||||||||||||||||||||||| ||||  || ||| |||||||||  |||||||||||||||||||||||| |||||||||||||| ||||||||    
T  26906985 ataatatcaaaatcctcagacacacaaacccatgccttcaaatcaaaatgccgttgaacttctttatcattgtaaagaagttgggcaagggtagtttttc 26906886  T
Q  111 ctaaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtatctctctgtgacagcaacatgttcattattgtctctttgtcatcctt 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||| ||||||||||||||||||||||||||    
T  26906885 ctaaacctcccatgcccaaaattgcaacaacacctatattattatgggttgtgtctctctctgatagcaacatattcattattgtctctttgtcatcctt 26906786  T
Q  211 cctacc 216  Q
    ||||||    
T  26906785 cctacc 26906780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 144
Target Start/End: Original strand, 135871 - 136002
Alignment:
Q  13 aatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggcagtttttcct 112  Q
    |||||| |||||||| || |||||| |||| ||  ||| ||||||||| | |||||||||||||||||| |||| |||||||||||| |  ||||| ||     
T  135871 aatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagagtggttttgcca 135970  T
Q  113 aaacctcccatgcccaaaattgcaacaacacc 144  Q
    | ||| ||||| |||||||||||||| |||||    
T  135971 acaccgcccatacccaaaattgcaaccacacc 136002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 144
Target Start/End: Original strand, 145922 - 146053
Alignment:
Q  13 aatatcaaaatcctcagacacacaagcccacaccctcatatcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggcagtttttcct 112  Q
    |||||| |||||||| || |||||| |||| ||  ||| ||||||||| | |||||||||||||||||| |||| |||||||||||| |  ||||| ||     
T  145922 aatatcgaaatcctccgatacacaaacccagactttcagatcaaaatggtcttgaacttctttatcattataaagaagttgggcaagagtggttttgcca 146021  T
Q  113 aaacctcccatgcccaaaattgcaacaacacc 144  Q
    | ||| ||||| |||||||||||||| |||||    
T  146022 acaccgcccatacccaaaattgcaaccacacc 146053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 52 - 155
Target Start/End: Complemental strand, 11485064 - 11484961
Alignment:
Q  52 atcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggcagtttttcctaaacctcccatgcccaaaattgcaacaacacctatatta 151  Q
    ||||||||| |||| ||||| || ||| |||||||||||||| |||||||  ||||| || |  ||||||||  ||||||||||||||||||||| ||||    
T  11485064 atcaaaatgctgttcaactttttcatcgttgtaaacaagttgtgcaagggtcgttttaccgacgcctcccataaccaaaattgcaacaacacctaaatta 11484965  T
Q  152 ttat 155  Q
    ||||    
T  11484964 ttat 11484961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 44957735 - 44957834
Alignment:
Q  56 aaatgttgttgaacttctttatcattgtaaacaagttgggcaagggcagtttttcctaaacctcccatgcccaaaattgcaacaacacctatattattat 155  Q
    |||||||||| ||||| | ||||||||||||||||||| || || |  ||||| || | ||||||||| || ||  | ||||||||||||| ||||||||    
T  44957735 aaatgttgttcaacttttatatcattgtaaacaagttgtgcgagagtcgttttaccgacacctcccatacctaaggtggcaacaacacctaaattattat 44957834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 142
Target Start/End: Original strand, 31679755 - 31679845
Alignment:
Q  52 atcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggcagtttttcctaaacctcccatgcccaaaattgcaacaaca 142  Q
    ||||||| ||| |||||| |||||||||||||||| |||||| || ||||| ||||| || | |||||||||||| ||||||| |||||||    
T  31679755 atcaaaacgttcttgaacatctttatcattgtaaagaagttgagctagggctgttttaccgacacctcccatgccgaaaattgaaacaaca 31679845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 52 - 155
Target Start/End: Original strand, 17852966 - 17853069
Alignment:
Q  52 atcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggcagtttttcctaaacctcccatgcccaaaattgcaacaacacctatatta 151  Q
    ||||||||| |||| ||| | || ||||||||||||||| || |||||||  ||||| || | ||||||||| ||||| |||||||||||||||| |||     
T  17852966 atcaaaatgatgttcaaccttttcatcattgtaaacaagctgtgcaagggtcgttttaccgacacctcccatccccaatattgcaacaacacctaaattg 17853065  T
Q  152 ttat 155  Q
    ||||    
T  17853066 ttat 17853069  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 53 - 111
Target Start/End: Original strand, 7128998 - 7129056
Alignment:
Q  53 tcaaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggcagtttttcc 111  Q
    |||||||||||||| |||||||| |||||||| |||||||| ||||| ||||| |||||    
T  7128998 tcaaaatgttgttgcacttctttgtcattgtatacaagttgagcaagtgcagtctttcc 7129056  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 7482138 - 7482082
Alignment:
Q  55 aaaatgttgttgaacttctttatcattgtaaacaagttgggcaagggcagtttttcc 111  Q
    |||||||||||| |||||||| |||||||| |||||||| ||||| ||||| |||||    
T  7482138 aaaatgttgttgcacttctttgtcattgtatacaagttgagcaagtgcagtctttcc 7482082  T

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