View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2604_high_62 (Length: 203)
Name: NF2604_high_62
Description: NF2604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2604_high_62 |
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Alignment Details
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 28229411 - 28229230
Alignment:
| Q |
1 |
cattctggagagatgtttcctgacctttcccttcacaacttttacaatgcagagaaaccctcaacaccacaacctgcaacaaaattcattcaaaaattcc |
100 |
Q |
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| T |
28229411 |
cattctggagagatgtttcctgaccttccccttcacaacttttacaatgcagagaaaccctcaacaccacaacctgcaacaaaattcattcaaaaatccc |
28229312 |
T |
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| Q |
101 |
aataaacacgatgaaaaaacactcaagtccattatctatactatataatgaaaaagttacttatacacatgtgaaataattc |
182 |
Q |
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| T |
28229311 |
aacaaacacgatgaaagaacactcaagtccattgtctagactatacaatgaaaaagttgcttatacacatgtgaaataattc |
28229230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 40454099 - 40453940
Alignment:
| Q |
1 |
cattctggagagatgtttcctgacctttcccttcacaacttttacaatgcagagaaaccctcaacaccacaacctgcaacaaaattcattcaaaaattcc |
100 |
Q |
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| T |
40454099 |
cattctggagagatgtttcctgacctt-cccttcacaacctttacaatgcagagaaaccctcaacaccacaacctgcaacacaattcattcaa------- |
40454008 |
T |
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| Q |
101 |
aataaacacgatgaaaaaacactcaagtccattatctatactatataatgaaaaagttacttatacacatgtgaaataatt |
181 |
Q |
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| T |
40454007 |
-------------aagaaacactcaagtccattgtctatactatacaatgaaaaacttgcttatacacatgtgaaataatt |
40453940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 29145601 - 29145551
Alignment:
| Q |
27 |
ttcccttcacaacttttacaatgcagagaaaccctcaacaccacaacctgc |
77 |
Q |
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||||||||||| | ||| ||||||| |||||||||||| |||||||||||| |
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| T |
29145601 |
ttcccttcacaccctttgcaatgcaaagaaaccctcaataccacaacctgc |
29145551 |
T |
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