View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2604_high_7 (Length: 536)
Name: NF2604_high_7
Description: NF2604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2604_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 4 - 472
Target Start/End: Complemental strand, 29571718 - 29571249
Alignment:
| Q |
4 |
ggatcaattcccattttcttgagctttttctttatgtgagtattccaatgattcttaatctcgttgtcggttcgtccaggtagatgagatgcaattttgg |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29571718 |
ggatcaattcccattttcttgagctttttctttatgtgagtattccaatgattcttaatctcgttgtcggttcgtccaggtagatgagatgcaattttgg |
29571619 |
T |
|
| Q |
104 |
accatctgcataagaaaaaaggattaatattaatcaaagtgacactaataatcattttacatttctatcagatgaaatttaaactctgacttttaatatt |
203 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||| |||| ||| |
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| T |
29571618 |
accatctgcataagaaaaaagaattaatattaatcaaagtgacattaataatcattttacatttctatcggatgaaatttgaactctgactcttaaaatt |
29571519 |
T |
|
| Q |
204 |
acaacatcataattttagtaccgagctag-ccgctataaagtaat-aaagtaaccctagctannnnnnnnatagaaatgatttcatcataaggtccaaaa |
301 |
Q |
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||||| ||||| | ||| || ||||||| || |||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
29571518 |
acaacgtcatactcttattattgagctagaccactataaagtaataaaagtaaccctagc-aatttttttatagaaatgatttcatcataaggtccaaaa |
29571420 |
T |
|
| Q |
302 |
ggaataatgacttcacggccatcttaaacaaatgtcatagaagttaagaaataaaaacattaacctataagacaaacatgtctttcattaaacttattca |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29571419 |
ggaataatgacttcacggccatcttaaacaaatgtcatagaagttcagaaataaaaacattaacctataagacaaacatgtctttcattaaacttattca |
29571320 |
T |
|
| Q |
402 |
atatttacgattcccctttggagtcaactttatagaacagcaatcatgaatattttcttttctgttacctt |
472 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29571319 |
atatttacgattcccatttggagtcaactttatagaacagcaatcatgaatattttcttttcttttacctt |
29571249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 4 - 123
Target Start/End: Complemental strand, 33379933 - 33379814
Alignment:
| Q |
4 |
ggatcaattcccattttcttgagctttttctttatgtgagtattccaatgattcttaatctcgttgtcggttcgtccaggtagatgagatgcaattttgg |
103 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| || || || || || |||| |||||||| |||||| ||||| || | |
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| T |
33379933 |
ggatcaattcccattttcttgagctttttctttatgtgagtattccaatgattttttatttcattatccgttcttccaggtaaatgagaagcaatcttag |
33379834 |
T |
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| Q |
104 |
accatctgcataagaaaaaa |
123 |
Q |
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|||||||| | ||||||||| |
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| T |
33379833 |
accatctgtaaaagaaaaaa |
33379814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 42422618 - 42422690
Alignment:
| Q |
4 |
ggatcaattcccattttcttgagctttttctttatgtgagtattccaatgattcttaatctcgttgtcggttc |
76 |
Q |
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|||||||||||||| || ||||||||||||| ||||| || ||||||||||| |||||||| ||||| |||| |
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| T |
42422618 |
ggatcaattcccatcttaatgagctttttcttgatgtgtgtgttccaatgatttttaatctcattgtctgttc |
42422690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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