View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2604_high_8 (Length: 518)
Name: NF2604_high_8
Description: NF2604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2604_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 13 - 499
Target Start/End: Complemental strand, 2237930 - 2237456
Alignment:
| Q |
13 |
gaagaaaatacttatgatgaatatatatttttt-ggagtatcataaaacattgaaagaatttctctaacgtcaccaaacaagtatgaggactcccttnnn |
111 |
Q |
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| T |
2237930 |
gaagaaaataattatgatgaatatttatttttttggagtatcataaaacattgaaaga-tttatctaacctcaccaatcaagtatggggacta------- |
2237839 |
T |
|
| Q |
112 |
nnnnttcaagttttggattatcactcattcctttttactttttgacccttttatatcgacgtataattgtgctaaactctcaaaatataggagttactac |
211 |
Q |
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| T |
2237838 |
-----tcaagtttggggctatcattcattccttctttcttttcgacccgtttatatcaaagtataattatgctaaactttcaatatataggagttactat |
2237744 |
T |
|
| Q |
212 |
gttggaacatcttcacttgaagaaggtgcgaccattaaagattgttgcatattccgtggaagccttgtaaaacttgatgctcaaaccggcgatatcttat |
311 |
Q |
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| T |
2237743 |
gttggaacatcttcactagaagaaggtgcaaccattaaagattgttgcatatttcgtggaagtcttgtaaaacttgatgctcaaaccggcgacatcttat |
2237644 |
T |
|
| Q |
312 |
ggaaaacccatatgttaccggataacaacggaaagataggagcatatgctggagctgccatttggggaagtagtccttccattgatgtttatcgaaaaca |
411 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2237643 |
ggaaaacctatatgttaccggataacaacggaaagataggagcatatgctggagctgccatttggggaagtagtccttccattgatgtttatcgaaaaca |
2237544 |
T |
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| Q |
412 |
tgtctatattgccaccggaaatctctactctgctccaaaaaacgtacttgaatgtcaagaaagacaaaataatcaaactactcctatt |
499 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2237543 |
tgtctatattgccaccggaaatctctactctgccccaaaaaacgtacttgaatgtcaagaaagacaaaataatcaaactactcctatt |
2237456 |
T |
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