View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2604_low_10 (Length: 476)
Name: NF2604_low_10
Description: NF2604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2604_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Complemental strand, 48277640 - 48277183
Alignment:
| Q |
1 |
cttgaaatccttactttatttatttgtttatcggttcaaataaatatagaattatataacaaatgtaggtaatcgattaaattaaaatctttgtaaatac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
48277640 |
cttgaaatccttactttatttatttgtttatcggttcaaataaatatagaattatataacaaatgtaggtaatcaattaaattaaaatctttgtaaatac |
48277541 |
T |
|
| Q |
101 |
aagaacattacatatatatcatgtttcattctggcgacgtgcatctggataaggattagaaaacctggtagaaaaacttggaggcaaatattcttcatct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48277540 |
aagaacattacatatatatcatgtttcattctggcgacgtgcatctggataaggattagaaaacctggtagaaaaacttggaggcaaatattcttcatct |
48277441 |
T |
|
| Q |
201 |
tcactttgagccccactattgaaattaagagcataactatgtgcatcatattgaaacctatgcttttgttgttttttcccatacccacttatttttctaa |
300 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48277440 |
tcactttgagccccactattaaaattaagagcataactatgtgcatcatattgaaacctatgcttttgttgttttttcccatacccacttatttttctaa |
48277341 |
T |
|
| Q |
301 |
gaaacgttttccacttaggaccagcaattacttctgaagtctccttcatcttcttcaacttgtccatcatccatgtctcttctcctctatttccttcact |
400 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48277340 |
gaaacgttttccacttaggaccagcaatcacttctgaagtctccttcatcttcttcaacttgtccatcatccatgtctcttctcctctatttccttcact |
48277241 |
T |
|
| Q |
401 |
cttttcattaagtagatgtttaccttcttcgtcgtggcgttgccgccatttcgaggtg |
458 |
Q |
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| T |
48277240 |
cttttcattaagtagatgtttaccttcttcgtcgtggcgttgccaccatttcgaggtg |
48277183 |
T |
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Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 195 - 362
Target Start/End: Complemental strand, 25246944 - 25246777
Alignment:
| Q |
195 |
tcatcttcactttgagccccactattgaaattaagagcataactatgtgcatcatattgaaacctatgcttttgttgttttttcccatacccacttattt |
294 |
Q |
| |
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||||||||||| |||||||||||| |||| || |||||||| || ||| |||||||||| ||| || ||| ||||| || || |||||| || || | |
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| T |
25246944 |
tcatcttcactctgagccccactactgaagttgagagcatagctgtgttcatcatattggaacttacccttctgttgcttcttaccatacatgctaatct |
25246845 |
T |
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| Q |
295 |
ttctaagaaacgttttccacttaggaccagcaattacttctgaagtctccttcatcttcttcaacttg |
362 |
Q |
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|||||| || || |||||||||||||| ||||| ||||||||| ||| ||||||||| |||||||| |
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| T |
25246844 |
ttctaatgaatgtcttccacttaggacctgcaatcacttctgaaacctctttcatcttcctcaacttg |
25246777 |
T |
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