View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2604_low_12 (Length: 458)
Name: NF2604_low_12
Description: NF2604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2604_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 21 - 249
Target Start/End: Original strand, 37995752 - 37995980
Alignment:
| Q |
21 |
aagaggaaattggataaggaagatttcaactaaacatttatgaaaattggactcttcactttacattctaagcgagggttgttaatccaaaatctactaa |
120 |
Q |
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| T |
37995752 |
aagaggaaattggataaggaagatttcaactaaacatttatgaaaattggactattcactttacattctaagcgagggttgttaatccaaaatctactaa |
37995851 |
T |
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| Q |
121 |
attgtaatcagagtcatgcacaataatttagatttcctacaccattgtttaaggatagcaaatcttgattccactcatataatatatttcttttgtcgta |
220 |
Q |
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| T |
37995852 |
attgtaatcagagtcatgcacaataatttagatttcctacaccattgtttaaggatagcaaatcttgattccactcatataatatatttattttgtcata |
37995951 |
T |
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| Q |
221 |
gaactgttaaatcatagttaattaaagga |
249 |
Q |
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| T |
37995952 |
gaactgttaaatcatagttaattaaagga |
37995980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 333 - 447
Target Start/End: Original strand, 37995987 - 37996100
Alignment:
| Q |
333 |
ttacaaggaagttaattaaccttattggaattgcttnnnnnnnntacttctactacttattccatttgtaacgtatannnnnnnatatgatatcatgttc |
432 |
Q |
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| T |
37995987 |
ttacaaggaagttaattaaccttattggaattgcttaaaaaaaatacttctactacttattccatttgtaacgt-tatttttttatatgatatcatgttc |
37996085 |
T |
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| Q |
433 |
atattttatgatgat |
447 |
Q |
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| T |
37996086 |
atattttattatgat |
37996100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 235
Target Start/End: Original strand, 38004016 - 38004106
Alignment:
| Q |
146 |
atttagatttcctacaccattgtttaaggatagcaaatcttgattccactcatataatatatttct-tttgtcgtagaactgttaaatcat |
235 |
Q |
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| T |
38004016 |
atttagatttactgcatcattgtttaagaatagcaaatctggattccacacagatagtgtatttatctttgtcatagaacggttaaatcat |
38004106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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