View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2604_low_13 (Length: 453)
Name: NF2604_low_13
Description: NF2604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2604_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 3e-89; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 80 - 298
Target Start/End: Original strand, 6096648 - 6096864
Alignment:
| Q |
80 |
aaggttgctgccacgaaaaatcatagtaaacggaccatttttgttgaaatcaaaagtcgataatcccatctcaccatttggttatgtctcaaatgaagaa |
179 |
Q |
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| T |
6096648 |
aaggttgctgccacgaaaaatcatagtaaacggaccatttttgttgaaatcaaaagtcgataatcctatctcaccatctggttatgtctcaaatgaagaa |
6096747 |
T |
|
| Q |
180 |
ttgttcgaattaaaagcatctactataaacaaacaatcagtactcacaagcaaaaaccaacatcgacnnnnnnnnngttcattcaaaaatccacataact |
279 |
Q |
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| T |
6096748 |
ttgttcgaatt-aaagcatctactataaacaaacaatcagtactcacaagcaaaaaccaacatcaac-aagaaaaagttcattcaaaaatccacataact |
6096845 |
T |
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| Q |
280 |
cctagtgcccacaccttgg |
298 |
Q |
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||||||||||||||||||| |
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| T |
6096846 |
cctagtgcccacaccttgg |
6096864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 295 - 443
Target Start/End: Original strand, 6097035 - 6097183
Alignment:
| Q |
295 |
ttgggttattcctttctattctaataaattccctaagtcatgaagtcatgacgcgggaattgtcttataactcgtaaaacttatcctgtaatgtttaggt |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6097035 |
ttgggttattcctttctattctaataaattccctaagtcatgaagtcatgacgcgggaattgtcttataactcgtaaaacttatcctgtaatgtttaggt |
6097134 |
T |
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| Q |
395 |
gcaaaattatgatattttgggcaatacatccatataagtatcagaataa |
443 |
Q |
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| T |
6097135 |
gcaaaattatgatattttggacaatacatccatataagtatcagaataa |
6097183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 6096554 - 6096609
Alignment:
| Q |
26 |
gtagtaacgaaaggactggatgccatttaaatattgttgactaaaaatcacattaa |
81 |
Q |
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|||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
6096554 |
gtagtaacgaaaagcatggatgccatttaaatattgttgactaaaaatcacattaa |
6096609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 295 - 372
Target Start/End: Original strand, 27766374 - 27766451
Alignment:
| Q |
295 |
ttgggttattcctttctattctaataaattccctaagtcatgaagtcatgacgcgggaattgtcttataactcgtaaa |
372 |
Q |
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| T |
27766374 |
ttgggttattcctttctattctaaaaaattccctaagtcatgaagtcatgacgcgggaattgtcttatgactcgtaaa |
27766451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 395 - 443
Target Start/End: Complemental strand, 3077264 - 3077216
Alignment:
| Q |
395 |
gcaaaattatgatattttgggcaatacatccatataagtatcagaataa |
443 |
Q |
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|||||||| |||| ||||||| ||||||||||||| | ||||||||||| |
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| T |
3077264 |
gcaaaattctgatgttttgggaaatacatccatatcaatatcagaataa |
3077216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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