View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2604_low_15 (Length: 436)
Name: NF2604_low_15
Description: NF2604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2604_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 21 - 425
Target Start/End: Original strand, 49690243 - 49690647
Alignment:
| Q |
21 |
agtgattttattttgaaggaaataccgtatttttctaggttgagatagtggtctttggaatattcaaacgtgaagaagagaattattagcagagaattta |
120 |
Q |
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| T |
49690243 |
agtgcttttattttgaaggaaataccgtatttttctaggttgagatagtggtctttggaatattcaaacgtgaagaagagaattattagcagagaattta |
49690342 |
T |
|
| Q |
121 |
gcaagaagtggatttcaatttcaaaagaaataaatggtggtcaattttagccgcaagtcattgtggccggtgataactacaaattcataagacttgtgtg |
220 |
Q |
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| T |
49690343 |
gcaagaagtggatttcaatttcaaaagaaataaatggtggtcaattttagctgcaagtcattgtggccggtgataactacaaatttacaagacttgtgtg |
49690442 |
T |
|
| Q |
221 |
gtactcattttccaagtcaactagcgtgtcaatttgcttcgaagaatatatttatgtcgtgcaaattaaaagtgtggaacaaattgtttaacacaattga |
320 |
Q |
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| T |
49690443 |
gtactcattttccaagtcaactagcgtgtcaatttgcttcaaagaatatatttatgtcgtgcaaattaaaagtgtggaacaaattgtttaacacaattga |
49690542 |
T |
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| Q |
321 |
atggctttagtttatgttttacattttaggttccttttgttctctcatttaattgtgttactgctacttgtcttaactaggaaaggaaatggacacagtg |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49690543 |
atggctttagtttatgttttacattttaggttccttttgttctctcatttgactgtgttactgctacttgtcttaactaggaaaggaaatggacacagtg |
49690642 |
T |
|
| Q |
421 |
atgat |
425 |
Q |
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|||| |
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| T |
49690643 |
gtgat |
49690647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 199 - 425
Target Start/End: Original strand, 49686170 - 49686387
Alignment:
| Q |
199 |
acaaattcataagacttgtgtggtactcattttccaagtcaacta--gcgtgtcaatttgcttcgaagaatatatttatgtcgtgcaaattaa-aagtgt |
295 |
Q |
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| T |
49686170 |
acaaattcacatgacttgtgtagta---attttccaagtcaactatagcgtgtcaattggcttcaaaggatatatttatgttgtgcaaattaacaagtgt |
49686266 |
T |
|
| Q |
296 |
ggaacaaattgtttaacacaattgaatggctttagtttatgttttacattttaggttccttttgttctctcatttaattgtgttactgctacttgtctta |
395 |
Q |
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| T |
49686267 |
ggaacaaattgtgaaacagaataggatggctctagttcatgcactacat---------cttttgttctctcatttgactgtgttactgctacttgtctta |
49686357 |
T |
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| Q |
396 |
actaggaaaggaaatggacacagtgatgat |
425 |
Q |
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| T |
49686358 |
actagtaaaggaaatggacacagtgatgat |
49686387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 354 - 425
Target Start/End: Original strand, 49678949 - 49679020
Alignment:
| Q |
354 |
cttttgttctctcatttaattgtgttactgctacttgtcttaactaggaaaggaaatggacacagtgatgat |
425 |
Q |
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| T |
49678949 |
cttttgttctctcatttaattgtgttactgctacttgtcttaactaggaaaggaaatggacacagtgatgat |
49679020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 205 - 319
Target Start/End: Original strand, 49678769 - 49678885
Alignment:
| Q |
205 |
tcataagacttgtgtggtactcattttccaagtcaactagcgtgtcaatttgcttcgaagaatatatttatgtcgtgcaaatta--aaagtgtggaacaa |
302 |
Q |
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||||||||||||||||||||||||||| ||||||||||| |||||||||| ||| |||| |||| |||||| | ||||||| |||||||||||||| |
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| T |
49678769 |
tcataagacttgtgtggtactcattttacaagtcaactaacgtgtcaattggctcagaaggatatctttatgcactacaaattaagaaagtgtggaacaa |
49678868 |
T |
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| Q |
303 |
attgtttaacacaattg |
319 |
Q |
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|||| | |||||||||| |
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| T |
49678869 |
attgataaacacaattg |
49678885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 156
Target Start/End: Original strand, 49686081 - 49686140
Alignment:
| Q |
97 |
agagaattattagcagagaatttagcaagaagtggatttcaatttcaaaagaaataaatg |
156 |
Q |
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||||||| | || ||||||||||||||| || ||| |||||||||||||| ||||||||| |
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| T |
49686081 |
agagaatcagtatcagagaatttagcaaaaattgggtttcaatttcaaaacaaataaatg |
49686140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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