View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2604_low_17 (Length: 398)

Name: NF2604_low_17
Description: NF2604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2604_low_17
NF2604_low_17
[»] chr4 (13 HSPs)
chr4 (19-393)||(53713567-53713942)
chr4 (286-364)||(32818405-32818483)
chr4 (277-364)||(35065026-35065113)
chr4 (277-370)||(9064194-9064287)
chr4 (279-379)||(9134575-9134675)
chr4 (277-393)||(39386596-39386712)
chr4 (286-364)||(26617440-26617518)
chr4 (310-371)||(1616387-1616447)
chr4 (279-379)||(33456339-33456439)
chr4 (280-371)||(50061656-50061747)
chr4 (292-349)||(29779104-29779161)
chr4 (212-273)||(55187083-55187144)
chr4 (312-384)||(8604637-8604709)
[»] chr8 (9 HSPs)
chr8 (277-364)||(37684368-37684455)
chr8 (277-393)||(13384660-13384776)
chr8 (277-391)||(38868461-38868575)
chr8 (291-393)||(32927869-32927971)
chr8 (277-386)||(4662916-4663025)
chr8 (283-363)||(26668521-26668601)
chr8 (280-371)||(44141078-44141169)
chr8 (277-369)||(463143-463235)
chr8 (312-364)||(11572493-11572545)
[»] chr6 (8 HSPs)
chr6 (212-369)||(4910802-4910963)
chr6 (291-364)||(26280582-26280655)
chr6 (291-386)||(6654103-6654198)
chr6 (291-363)||(765422-765494)
chr6 (291-378)||(5724649-5724738)
chr6 (294-369)||(28052929-28053004)
chr6 (279-344)||(3809628-3809693)
chr6 (291-371)||(3482023-3482103)
[»] chr5 (9 HSPs)
chr5 (291-393)||(42858085-42858187)
chr5 (277-347)||(29922857-29922928)
chr5 (291-374)||(34250376-34250459)
chr5 (312-393)||(18851088-18851169)
chr5 (312-393)||(38845441-38845522)
chr5 (297-364)||(9818717-9818784)
chr5 (310-347)||(5465521-5465558)
chr5 (310-371)||(39097242-39097303)
chr5 (277-385)||(14299293-14299401)
[»] chr1 (5 HSPs)
chr1 (277-364)||(28083923-28084010)
chr1 (321-386)||(11049257-11049322)
chr1 (321-364)||(3515825-3515868)
chr1 (279-386)||(47321920-47322026)
chr1 (291-364)||(6021781-6021854)
[»] chr2 (9 HSPs)
chr2 (283-393)||(33019162-33019272)
chr2 (291-364)||(2002730-2002803)
chr2 (277-364)||(12037024-12037111)
chr2 (212-364)||(31453278-31453433)
chr2 (277-359)||(6327109-6327191)
chr2 (316-364)||(5533066-5533114)
chr2 (330-393)||(33502253-33502316)
chr2 (322-364)||(44439262-44439304)
chr2 (312-364)||(42740975-42741027)
[»] scaffold0168 (1 HSPs)
scaffold0168 (277-384)||(31789-31896)
[»] chr7 (3 HSPs)
chr7 (283-369)||(22195833-22195919)
chr7 (321-363)||(28725088-28725130)
chr7 (310-362)||(41386852-41386904)
[»] chr3 (8 HSPs)
chr3 (292-347)||(7742195-7742250)
chr3 (286-364)||(35058333-35058411)
chr3 (294-347)||(32111974-32112027)
chr3 (289-364)||(37335069-37335144)
chr3 (291-345)||(7717375-7717429)
chr3 (310-347)||(40339222-40339259)
chr3 (291-364)||(44771671-44771744)
chr3 (291-347)||(41115414-41115470)
[»] scaffold0361 (1 HSPs)
scaffold0361 (291-332)||(14180-14221)


Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 19 - 393
Target Start/End: Complemental strand, 53713942 - 53713567
Alignment:
Q  19 gtttagactttaaaccatggatttggacactaaagctatactcatagaattcattattggttgaaatgaaagtaaagatgatgcgacacgatggcatctg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53713942 gtttagactttaaaccatggatttggacactaaagctatactcatagaattcattattggttgaaatgaaagtaaagatgatgcgacacgatggcatctg 53713843  T
Q  119 tttttggtttaatcccactgcaaataaaataattaatccaataatttgcaactgctgcatatttgtggaatcctataatcctaagaaattaaa-gtatgc 217  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  53713842 tttttgttttaatcccactgcaaataaaataattaatccaataatttgcaactgctgcatatttgtggaatcctataatcctaagaaattaaatgtatgc 53713743  T
Q  218 ttgattccacttttaaagtgatcagaattgattatgaatgtataggattgatttttacatggttgttgtcgaatagaattgattttgtctcaagaattaa 317  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||    
T  53713742 ttgattccacttttaaagtgatcataattgattatgaatgtataggattgatttttatatggttgttgtcgaatagaattaattttgtttcaagaattaa 53713643  T
Q  318 ttttacttgaagctacaatttgtagcttttcattctaaaattgatttccacacaaatatatatagttcatctcact 393  Q
    |||||||||||||||| ||||||||||||| |||||| |||||| ||||||| |||||||||||||||| ||||||    
T  53713642 ttttacttgaagctacgatttgtagcttttgattctataattgacttccacataaatatatatagttcaactcact 53713567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 286 - 364
Target Start/End: Complemental strand, 32818483 - 32818405
Alignment:
Q  286 tcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgattt 364  Q
    |||| |||||||||||||| ||| |||||| ||| || ||||||||| |||||||||||||| |||||| |||||||||    
T  32818483 tcgagtagaattgattttgcctccagaattgattctatttgaagctagaatttgtagcttttgattctagaattgattt 32818405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 277 - 364
Target Start/End: Original strand, 35065026 - 35065113
Alignment:
Q  277 tggttgttgtcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgattt 364  Q
    |||||| | |||| |||||||||||||| ||||| |||| ||||||||||||||||  ||||||  ||||| |||||| |||||||||    
T  35065026 tggttgctttcgagtagaattgattttgcctcaataattgattttacttgaagctagtatttgtgacttttgattctagaattgattt 35065113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 277 - 370
Target Start/End: Original strand, 9064194 - 9064287
Alignment:
Q  277 tggttgttgtcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccacac 370  Q
    ||||||||||||||||||||| | |||| | | | |||| ||| |||||||| ||| ||||||||| |||| |||||| ||||||||| |||||    
T  9064194 tggttgttgtcgaatagaattaaatttgccaccataattgattctacttgaaactagaatttgtagtttttgattctagaattgattttcacac 9064287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 279 - 379
Target Start/End: Original strand, 9134575 - 9134675
Alignment:
Q  279 gttgttgtcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccacacaaatatat 378  Q
    |||||| |||| | |||||||||||   || |||||| ||  |||||||||||| |||||||||||||| ||| || ||||||||| ||||||||| |||    
T  9134575 gttgttatcgagtggaattgattttacttccagaattgatcctacttgaagctaaaatttgtagcttttgattttagaattgattttcacacaaatttat 9134674  T
Q  379 a 379  Q
    |    
T  9134675 a 9134675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 277 - 393
Target Start/End: Original strand, 39386596 - 39386712
Alignment:
Q  277 tggttgttgtcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccacacaaatat 376  Q
    ||||||||| | | ||||||||||| |||||| | |||| ||| ||||| |||||| ||||| || | ||| |||||| ||||||||| |||||| ||||    
T  39386596 tggttgttgacaagtagaattgattctgtctctaaaattgattctacttaaagctaaaatttataacatttaattctataattgattttcacacacatat 39386695  T
Q  377 atatagttcatctcact 393  Q
     || |||||| ||||||    
T  39386696 ttaaagttcaactcact 39386712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 364
Target Start/End: Original strand, 26617440 - 26617518
Alignment:
Q  286 tcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgattt 364  Q
    |||| |||||||||||||| ||| | || | ||| |||||||||||| ||| |||||||||| ||| ||||||||||||    
T  26617440 tcgagtagaattgattttgcctccaaaaatgattctacttgaagctagaatctgtagcttttgattataaaattgattt 26617518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 310 - 371
Target Start/End: Original strand, 1616387 - 1616447
Alignment:
Q  310 agaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccacaca 371  Q
    |||||| ||| ||||| ||||||||||||||||||||| |||||| |||||||| |||||||    
T  1616387 agaattgattctactt-aagctacaatttgtagcttttgattctagaattgattcccacaca 1616447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 379
Target Start/End: Original strand, 33456339 - 33456439
Alignment:
Q  279 gttgttgtcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccacacaaatatat 378  Q
    |||| |||||| |||||||||||  ||||| |||||| ||| || || || |||  ||||||||||||| |||||| ||||||||| |||| |||| |||    
T  33456339 gttggtgtcgactagaattgattccgtctctagaatttattctatttaaaactatgatttgtagcttttgattctataattgattttcacataaatctat 33456438  T
Q  379 a 379  Q
    |    
T  33456439 a 33456439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 280 - 371
Target Start/End: Complemental strand, 50061747 - 50061656
Alignment:
Q  280 ttgttgtcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccacaca 371  Q
    |||||||| | |||||||||||||| ||| | |||| ||| ||||||||| ||  |||||||| |||| |||||| | ||||||| ||||||    
T  50061747 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtagtttttgattctagagttgattttcacaca 50061656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 349
Target Start/End: Complemental strand, 29779161 - 29779104
Alignment:
Q  292 agaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttca 349  Q
    |||||||||||||  |  |||||| ||| |||||||||||| ||||||||||||||||    
T  29779161 agaattgattttgcttgtagaattgattctacttgaagctagaatttgtagcttttca 29779104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 273
Target Start/End: Complemental strand, 55187144 - 55187083
Alignment:
Q  212 gtatgcttgattccacttttaaagtgatcagaattgattatgaatgtataggattgattttt 273  Q
    ||||| ||| ||||||||||||||||| || ||||||||||||| || ||| |||| |||||    
T  55187144 gtatgtttggttccacttttaaagtgaccataattgattatgaaagtgtagaattgcttttt 55187083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 384
Target Start/End: Complemental strand, 8604709 - 8604637
Alignment:
Q  312 aattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccacacaaatatatatagtt 384  Q
    |||| ||| ||||||||||||  ||||||||||||  |||||| ||||||||| |||||| | || |||||||    
T  8604709 aattgattctacttgaagctaagatttgtagctttcgattctagaattgattttcacacacaaatttatagtt 8604637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 277 - 364
Target Start/End: Original strand, 37684368 - 37684455
Alignment:
Q  277 tggttgttgtcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgattt 364  Q
    |||||||||| || |||||||||||||||||| |||||| ||| ||||||||| ||  |||||| |||||| ||||||||||||||||    
T  37684368 tggttgttgtggagtagaattgattttgtctccagaattgattctacttgaagttaggatttgtggcttttgattctaaaattgattt 37684455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 277 - 393
Target Start/End: Complemental strand, 13384776 - 13384660
Alignment:
Q  277 tggttgttgtcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccacacaaatat 376  Q
    ||||||||||||| | |||||  || | |||| | |||| ||| || ||||||||| |||||||||||||| |||||| ||||||||| |||||| | ||    
T  13384776 tggttgttgtcgagtcgaatttgttctttctccaaaattgattctatttgaagctaaaatttgtagcttttgattctagaattgattttcacacacaaat 13384677  T
Q  377 atatagttcatctcact 393  Q
     ||||||||| ||||||    
T  13384676 ttatagttcaactcact 13384660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 277 - 391
Target Start/End: Original strand, 38868461 - 38868575
Alignment:
Q  277 tggttgttgtcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccacacaaatat 376  Q
    ||||||||||||| || |||||||  || ||| | |||| ||| ||||||||||||  |||||||||||||  ||||| ||||||||| |||||| | ||    
T  38868461 tggttgttgtcgagtaaaattgatgatgcctctaaaattgattctacttgaagctaagatttgtagcttttggttctataattgattttcacacacaaat 38868560  T
Q  377 atatagttcatctca 391  Q
     ||||||||| ||||    
T  38868561 ttatagttcaactca 38868575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 393
Target Start/End: Original strand, 32927869 - 32927971
Alignment:
Q  291 tagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccacacaaatatatatagttcatctc 390  Q
    |||||||||||||| ||||| | || ||| ||||||||||||  ||||||||||||| ||| || |||| ||||  ||||| | || ||||||||| |||    
T  32927869 tagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattatagaattcatttttacacacaaatttatagttcaactc 32927968  T
Q  391 act 393  Q
    |||    
T  32927969 act 32927971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 386
Target Start/End: Complemental strand, 4663025 - 4662916
Alignment:
Q  277 tggttgttgtcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccacacaaatat 376  Q
    |||||| | ||| |||||||||||||||  ||  ||||| ||| ||||||||||||  |||||||||||||  ||||| |||||||||  ||||| | ||    
T  4663025 tggttgctttcggatagaattgattttgcatccggaatttattctacttgaagctaggatttgtagcttttgtttctagaattgatttttacacacaaat 4662926  T
Q  377 atatagttca 386  Q
     |||||||||    
T  4662925 gtatagttca 4662916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 363
Target Start/End: Original strand, 26668521 - 26668601
Alignment:
Q  283 ttgtcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatt 363  Q
    ||||||| ||||||||||| || ||| | |||| ||| ||||| || ||||||||||||| |||| |||||| ||||||||    
T  26668521 ttgtcgagtagaattgattctgcctccataattgattctacttaaaactacaatttgtagttttttattctataattgatt 26668601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 280 - 371
Target Start/End: Complemental strand, 44141169 - 44141078
Alignment:
Q  280 ttgttgtcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccacaca 371  Q
    |||||||| | |||||||||||||| ||| | |||| ||| ||||||||| ||  |||||||| |||| |||||| | ||||||| ||||||    
T  44141169 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtagtttttgattctagagttgattttcacaca 44141078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 369
Target Start/End: Complemental strand, 463235 - 463143
Alignment:
Q  277 tggttgttgtcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccaca 369  Q
    ||||||||||| | ||||||||||||||| |  |||||||||| || ||||| |||  |||||||| || | |||||| |||| |||| ||||    
T  463235 tggttgttgtctagtagaattgattttgtttttagaattaattctatttgaaactaagatttgtagtttatgattctagaatttattttcaca 463143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 364
Target Start/End: Complemental strand, 11572545 - 11572493
Alignment:
Q  312 aattaattttacttgaagctacaatttgtagcttttcattctaaaattgattt 364  Q
    |||| ||| |||||||||||| ||||||||| |||| ||| ||||||||||||    
T  11572545 aattgattatacttgaagctaaaatttgtagattttgattataaaattgattt 11572493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 212 - 369
Target Start/End: Original strand, 4910802 - 4910963
Alignment:
Q  212 gtatgcttgattccacttttaaagtgatcagaattgattatgaatgtataggattgatttttacatg----gttgttgtcgaatagaattgattttgtct 307  Q
    ||||| ||| ||||||||||| || ||  | |||||||| ||||||| ||| ||||||| | |||||    ||||| ||| | ||||||||||| || ||    
T  4910802 gtatgtttggttccacttttagagagactataattgattctgaatgtgtagaattgattctgacatgtttggttgtcgtcaattagaattgattctgcct 4910901  T
Q  308 caagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccaca 369  Q
    ||| |||| ||| ||||||||||||  ||||||||||||| |||||| ||||||||| ||||    
T  4910902 caaaaattgattctacttgaagctatgatttgtagcttttgattctagaattgattttcaca 4910963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 291 - 364
Target Start/End: Original strand, 26280582 - 26280655
Alignment:
Q  291 tagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgattt 364  Q
    |||||||||||||| |||||||||| |||  ||||||||||| ||||||||| |||| |||| |||||||||||    
T  26280582 tagaattgattttgcctcaagaattgattccacttgaagctagaatttgtagtttttgattccaaaattgattt 26280655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 386
Target Start/End: Complemental strand, 6654198 - 6654103
Alignment:
Q  291 tagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccacacaaatatatatagttca 386  Q
    |||||||||||||  ||  |||||||||| ||||||||||||  ||||||||||||| |||||| | ||||||| |||||| | || |||||||||    
T  6654198 tagaattgatttttccttcagaattaattctacttgaagctaggatttgtagcttttaattctagatttgattttcacacagaaatttatagttca 6654103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 291 - 363
Target Start/End: Complemental strand, 765494 - 765422
Alignment:
Q  291 tagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatt 363  Q
    ||||| || ||||| |||||||||| ||| ||||||||||||  ||||||||||||| |||||| ||||||||    
T  765494 tagaactggttttggctcaagaattgattctacttgaagctatgatttgtagcttttgattctagaattgatt 765422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 378
Target Start/End: Complemental strand, 5724738 - 5724649
Alignment:
Q  291 tagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattga--tttccacacaaatatat 378  Q
    |||||||||||||| ||| | |||| ||| ||||||||||||  ||||||| ||||| |||||| ||||||  ||| |||||||||||||    
T  5724738 tagaattgattttgcctccaaaattgattctacttgaagctaggatttgtaactttttattctataattgatttttacacacaaatatat 5724649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 294 - 369
Target Start/End: Original strand, 28052929 - 28053004
Alignment:
Q  294 aattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccaca 369  Q
    |||||||| |||||  |||||| ||| ||||||||| || ||||||||| | || |||||||||||||||| ||||    
T  28052929 aattgattgtgtctatagaattgattatacttgaagatagaatttgtagttattaattctaaaattgattttcaca 28053004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 344
Target Start/End: Original strand, 3809628 - 3809693
Alignment:
Q  279 gttgttgtcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagct 344  Q
    |||||| | ||||| ||||||||||||| | |||||||||| ||||||||| ||  ||||||||||    
T  3809628 gttgttttggaataaaattgattttgtcactagaattaattctacttgaagttaagatttgtagct 3809693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 371
Target Start/End: Original strand, 3482023 - 3482103
Alignment:
Q  291 tagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccacaca 371  Q
    ||||||||||| |||||  |||||| ||| ||||||||| ||  ||||||||| ||| ||| || ||||||||| ||||||    
T  3482023 tagaattgattctgtctttagaattgattatacttgaagttaagatttgtagcctttgattttagaattgattttcacaca 3482103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 291 - 393
Target Start/End: Original strand, 42858085 - 42858187
Alignment:
Q  291 tagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccacacaaatatatatagttcatctc 390  Q
    ||||||| |||||| ||| |||||| ||||||||||||| ||  ||||| ||||||| |||||| ||||||||| |||||| | || ||||||||| |||    
T  42858085 tagaattcattttgactctagaattgattttacttgaagttaggatttggagcttttaattctataattgattttcacacacaaatttatagttcaactc 42858184  T
Q  391 act 393  Q
    |||    
T  42858185 act 42858187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 347
Target Start/End: Original strand, 29922857 - 29922928
Alignment:
Q  277 tggttgttgtcgaatagaattgattttgtctcaagaattaatttt-acttgaagctacaatttgtagctttt 347  Q
    |||||||| ||||  |||||||||||||||||||||||| ||||| ||||||||||| || | |||||||||    
T  29922857 tggttgttctcgagcagaattgattttgtctcaagaattgattttaacttgaagctaaaaatcgtagctttt 29922928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 291 - 374
Target Start/End: Complemental strand, 34250459 - 34250376
Alignment:
Q  291 tagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccacacaaat 374  Q
    ||||||||||| || ||| |||||| ||| ||||||| |||| || ||||||||||| |||||| ||||| ||| |||||||||    
T  34250459 tagaattgattatgcctctagaattgattctacttgatgctagaaattgtagcttttgattctacaattgtttttcacacaaat 34250376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 393
Target Start/End: Complemental strand, 18851169 - 18851088
Alignment:
Q  312 aattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccacacaaatatatatagttcatctcact 393  Q
    |||| ||| ||||||||||||  ||||||||||||| ||| || ||||||||| |||||| |||| ||||||| | ||||||    
T  18851169 aattgattctacttgaagctatgatttgtagcttttgattatagaattgattttcacacacatatttatagttaaactcact 18851088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 393
Target Start/End: Original strand, 38845441 - 38845522
Alignment:
Q  312 aattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccacacaaatatatatagttcatctcact 393  Q
    |||| ||| ||||||||||||  |||||||| |||| |||||| ||||||||| |||||| | |||||||||| | ||||||    
T  38845441 aattgattctacttgaagctaagatttgtagtttttgattctagaattgattttcacacacaaatatatagttaaactcact 38845522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 297 - 364
Target Start/End: Original strand, 9818717 - 9818784
Alignment:
Q  297 tgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgattt 364  Q
    |||||||| ||| | |||| ||| ||||||||||||  ||||||||||||| |||||| |||||||||    
T  9818717 tgattttgcctccataattgattctacttgaagctatgatttgtagcttttgattctagaattgattt 9818784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 347
Target Start/End: Complemental strand, 5465558 - 5465521
Alignment:
Q  310 agaattaattttacttgaagctacaatttgtagctttt 347  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  5465558 agaattaattctacttgaagctacaatttgtagttttt 5465521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 371
Target Start/End: Original strand, 39097242 - 39097303
Alignment:
Q  310 agaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccacaca 371  Q
    |||||| ||| |||||||||||| |||||||| ||||| ||| || ||||||||| ||||||    
T  39097242 agaattgattctacttgaagctaaaatttgtaacttttaattatataattgattttcacaca 39097303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 385
Target Start/End: Original strand, 14299293 - 14299401
Alignment:
Q  277 tggttgttgtcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccacacaaatat 376  Q
    |||||||| ||||||| |||||||||||  |  | |||| ||| ||||||||| ||  |||||||| |||| |||||| ||||| ||| |||||| | ||    
T  14299293 tggttgttttcgaataaaattgattttgcttttaaaattgattctacttgaagttaggatttgtagttttttattctagaattggttttcacacataaat 14299392  T
Q  377 atatagttc 385  Q
     ||||||||    
T  14299393 ttatagttc 14299401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 277 - 364
Target Start/End: Complemental strand, 28084010 - 28083923
Alignment:
Q  277 tggttgttgtcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgattt 364  Q
    |||||||| |||| |||||||||||||||||    |||| ||| |||||||||||| |||||||||||||| |||||| |||| ||||    
T  28084010 tggttgttttcgagtagaattgattttgtcttcgtaattgattctacttgaagctagaatttgtagcttttgattctataattaattt 28083923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 386
Target Start/End: Original strand, 11049257 - 11049322
Alignment:
Q  321 tacttgaagctacaatttgtagcttttcattctaaaattgatttccacacaaatatatatagttca 386  Q
    ||||||||||||  ||||||||||||| ||||||||||||||||  ||||| | || |||||||||    
T  11049257 tacttgaagctaggatttgtagcttttgattctaaaattgatttttacacacaaatttatagttca 11049322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 321 - 364
Target Start/End: Original strand, 3515825 - 3515868
Alignment:
Q  321 tacttgaagctacaatttgtagcttttcattctaaaattgattt 364  Q
    |||||||||||| || |||||||||||||||||| |||||||||    
T  3515825 tacttgaagctagaaattgtagcttttcattctagaattgattt 3515868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 386
Target Start/End: Complemental strand, 47322026 - 47321920
Alignment:
Q  279 gttgttgtcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccacacaaatatat 378  Q
    ||||||||||| ||||||||||| ||  || | |||| ||| |||||||||||| |||||| || |||| |||||| ||||||||| || ||| | || |    
T  47322026 gttgttgtcgagtagaattgattctgcttctataattgattatacttgaagctagaatttgcag-ttttaattctagaattgattttcatacacaaattt 47321928  T
Q  379 atagttca 386  Q
    ||||||||    
T  47321927 atagttca 47321920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 364
Target Start/End: Original strand, 6021781 - 6021854
Alignment:
Q  291 tagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgattt 364  Q
    |||||||||||||| ||| |||||  ||| ||||||||||||  || |||||||||| |||||| ||| |||||    
T  6021781 tagaattgattttgcctctagaatcgattctacttgaagctaggatatgtagcttttgattctataatagattt 6021854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 283 - 393
Target Start/End: Complemental strand, 33019272 - 33019162
Alignment:
Q  283 ttgtcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccacacaaatatatatag 382  Q
    ||||||| || |||||||| || ||| |||||| ||| || ||||||||| ||||||||||||||  || || ||||||||| |||||| | || |||||    
T  33019272 ttgtcgagtataattgattctgcctctagaattgattatatttgaagctagaatttgtagcttttggttttagaattgattttcacacataaatttatag 33019173  T
Q  383 ttcatctcact 393  Q
    |||| ||||||    
T  33019172 ttcaactcact 33019162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 291 - 364
Target Start/End: Complemental strand, 2002803 - 2002730
Alignment:
Q  291 tagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgattt 364  Q
    |||||||||||||| ||| |||  | ||| ||||||||||||  |||||||| |||||||||||||||||||||    
T  2002803 tagaattgattttgcctccagacctgattctacttgaagctaggatttgtagtttttcattctaaaattgattt 2002730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 364
Target Start/End: Original strand, 12037024 - 12037111
Alignment:
Q  277 tggttgttgtcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgattt 364  Q
    ||||||||||||  |||||||| || ||| || |||||| ||| || ||||| ||| |||||||||||||| |||||| |||||||||    
T  12037024 tggttgttgtcgtgtagaattggttatgtgtctagaattgattctagttgaaactaaaatttgtagcttttgattctacaattgattt 12037111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 212 - 364
Target Start/End: Original strand, 31453278 - 31453433
Alignment:
Q  212 gtatgcttgattccacttttaaagtgatcagaattgattatgaatgtataggattgatttttacatg----gttgttgtcgaatagaattgattttgtct 307  Q
    ||||| |||| ||||||||||||| ||||| |||||||||||||||| ||  ||| ||| |  ||||    |||| ||| || ||||||| |||||| ||    
T  31453278 gtatgtttgactccacttttaaagagatcataattgattatgaatgtgtat-attaattctgtcatgtttggttgatgttgagtagaatttattttgcct 31453376  T
Q  308 caagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgattt 364  Q
    | | |||| ||| |||||||||||| |||||||  ||||| ||||| ||||||||||    
T  31453377 ctataattgattctacttgaagctaaaatttgttccttttgattctgaaattgattt 31453433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 359
Target Start/End: Complemental strand, 6327191 - 6327109
Alignment:
Q  277 tggttgttgtcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaatt 359  Q
    |||||||||| || || |||||||| ||| || |||||| ||| |||||||| ||| ||||||||| |||| |||||||||||    
T  6327191 tggttgttgttgattaaaattgattatgtttctagaattgattctacttgaaactaaaatttgtagtttttgattctaaaatt 6327109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 364
Target Start/End: Complemental strand, 5533114 - 5533066
Alignment:
Q  316 aattttacttgaagctacaatttgtagcttttcattctaaaattgattt 364  Q
    |||| ||||||||||||| ||||||||||||| ||||| ||||||||||    
T  5533114 aattctacttgaagctactatttgtagcttttgattcttaaattgattt 5533066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 330 - 393
Target Start/End: Original strand, 33502253 - 33502316
Alignment:
Q  330 ctacaatttgtagcttttcattctaaaattgatttccacacaaatatatatagttcatctcact 393  Q
    |||| ||||||| ||||| ||||||||||||||||  ||||| |||| ||||||||| ||||||    
T  33502253 ctactatttgtaacttttgattctaaaattgatttttacacacatatttatagttcaactcact 33502316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 364
Target Start/End: Original strand, 44439262 - 44439304
Alignment:
Q  322 acttgaagctacaatttgtagcttttcattctaaaattgattt 364  Q
    ||||||||||| |||||| ||||||| ||||||||||||||||    
T  44439262 acttgaagctaaaatttggagcttttgattctaaaattgattt 44439304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 364
Target Start/End: Original strand, 42740975 - 42741027
Alignment:
Q  312 aattaattttacttgaagctacaatttgtagcttttcattctaaaattgattt 364  Q
    |||| ||| ||||||||||||  ||||||||||||| |||||| |||||||||    
T  42740975 aattgattctacttgaagctaagatttgtagcttttgattctagaattgattt 42741027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 384
Target Start/End: Original strand, 31789 - 31896
Alignment:
Q  277 tggttgttgtcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccacacaaatat 376  Q
    ||||||||||||| || |||||||| || ||| | |||| ||| ||||||||||||  ||||||||||||| ||| |  ||||||||| |||| | ||||    
T  31789 tggttgttgtcgagtaaaattgattctgcctccaaaattgattatacttgaagctaggatttgtagcttttgattattgaattgattttcacatacatat 31888  T
Q  377 atatagtt 384  Q
     |||||||    
T  31889 ttatagtt 31896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 369
Target Start/End: Original strand, 22195833 - 22195919
Alignment:
Q  283 ttgtcgaatagaattgattttgt-ctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccaca 369  Q
    ||||||| ||||||||||| ||| ||||| |||| ||||||||| ||||||  ||||||| ||||| |||||||||||||||| ||||    
T  22195833 ttgtcgagtagaattgattatgtcctcaa-aattgattttactttaagctatgatttgtaacttttgattctaaaattgattttcaca 22195919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 363
Target Start/End: Complemental strand, 28725130 - 28725088
Alignment:
Q  321 tacttgaagctacaatttgtagcttttcattctaaaattgatt 363  Q
    |||||||||||| |||||||||||||| |||||| ||||||||    
T  28725130 tacttgaagctagaatttgtagcttttgattctataattgatt 28725088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 362
Target Start/End: Complemental strand, 41386904 - 41386852
Alignment:
Q  310 agaattaattttacttgaagctacaatttgtagcttttcattctaaaattgat 362  Q
    |||||| ||| ||||||||||||  ||||||||||||| |||||| |||||||    
T  41386904 agaattgattctacttgaagctaggatttgtagcttttaattctagaattgat 41386852  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 292 - 347
Target Start/End: Complemental strand, 7742250 - 7742195
Alignment:
Q  292 agaattgattttgtctcaagaattaattttacttgaagctacaatttgtagctttt 347  Q
    ||||||||||||||||  | ||||||||||||||||| ||| ||||||||||||||    
T  7742250 agaattgattttgtctatataattaattttacttgaaactaaaatttgtagctttt 7742195  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 364
Target Start/End: Original strand, 35058333 - 35058411
Alignment:
Q  286 tcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgattt 364  Q
    |||| |||||||||||||| |||||||||| ||| |||||| ||||| || ||  ||||||| |||||| |||||||||    
T  35058333 tcgagtagaattgattttgcctcaagaattgattctacttggagctagaaattcgagcttttgattctagaattgattt 35058411  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 294 - 347
Target Start/End: Original strand, 32111974 - 32112027
Alignment:
Q  294 aattgattttgtctcaagaattaattttacttgaagctacaatttgtagctttt 347  Q
    |||||||||||| |  |||||| ||| |||||||||||||||||||||||||||    
T  32111974 aattgattttgtatgtagaattgattctacttgaagctacaatttgtagctttt 32112027  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 289 - 364
Target Start/End: Complemental strand, 37335144 - 37335069
Alignment:
Q  289 aatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgattt 364  Q
    |||| ||||||||||| ||| |||||| |||||||| |||| || || | ||||||||| |||||| |||||||||    
T  37335144 aataaaattgattttgcctcgagaattgattttactagaagttagaaatcgtagcttttgattctagaattgattt 37335069  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 345
Target Start/End: Complemental strand, 7717429 - 7717375
Alignment:
Q  291 tagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagctt 345  Q
    |||||||||||||| ||| |||||| ||| |||||||||||| || |||||||||    
T  7717429 tagaattgattttgcctccagaattgattctacttgaagctagaaattgtagctt 7717375  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 347
Target Start/End: Original strand, 40339222 - 40339259
Alignment:
Q  310 agaattaattttacttgaagctacaatttgtagctttt 347  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  40339222 agaattgattctacttgaagctacaatttgtagctttt 40339259  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 364
Target Start/End: Original strand, 44771671 - 44771744
Alignment:
Q  291 tagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgattt 364  Q
    |||||||| ||||| |||  ||||| ||| ||| | || ||| |||||||||||||| ||||||||||||||||    
T  44771671 tagaattggttttgcctccggaattgattctacctaaatctagaatttgtagcttttgattctaaaattgattt 44771744  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 347
Target Start/End: Complemental strand, 41115470 - 41115414
Alignment:
Q  291 tagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagctttt 347  Q
    ||||||||||||||  |  |||||| ||| |||||||||||| ||||||||||||||    
T  41115470 tagaattgattttgcttgtagaattgattctacttgaagctagaatttgtagctttt 41115414  T

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Target: scaffold0361 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 332
Target Start/End: Complemental strand, 14221 - 14180
Alignment:
Q  291 tagaattgattttgtctcaagaattaattttacttgaagcta 332  Q
    |||||||||||||||| |||||||| ||| ||||||||||||    
T  14221 tagaattgattttgtcacaagaattgattctacttgaagcta 14180  T

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