View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2604_low_18 (Length: 397)
Name: NF2604_low_18
Description: NF2604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2604_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 8352950 - 8353332
Alignment:
| Q |
1 |
ctggtccagcagcagttggagcaaaacaaacacacaaaattgaagcaatgaatgtcaacaagaaattagttcccaagaaatatagaaaccccatcaagta |
100 |
Q |
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| T |
8352950 |
ctggtccagcagcagttggagcaaaacaaacacacagaattgaagcaatgaatgtcaacaagaaattagtccccaagaaatatagaaatcccatcaagta |
8353049 |
T |
|
| Q |
101 |
cctgcatccacaatttataccatcaaggttttaaattgtagtcacaattattcttaac-----aaaggcatgtgactatgatcgacgcatctgatattga |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
8353050 |
cctgcatccacaatttataccatcaaggttttaaattgtagtcacaattattcttaacaaattaaaggcatgtgactatgctcgacgcatctgatattga |
8353149 |
T |
|
| Q |
196 |
gtctacgaggtgttagctcagtgtaagaaattgaccctatagtctcgagatacggatttctatcatgaactgctttaaaatcgacattagtgacatttac |
295 |
Q |
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|
|||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
8353150 |
gtctacgaggtgttagctcagtgtaagagattgaccctatagtctcaagagacggatttctatcatgaactgctttaaaatggacattagtgacatttac |
8353249 |
T |
|
| Q |
296 |
aatttttggattnnnnnnnnncaacttatattgaagtcattaatcagatttgaccaaaatttctcattataaacaaaaattaaa |
379 |
Q |
| |
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||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
8353250 |
gattttcggataaaaaaaacataacttatattgaagtcattaatcatatttgaccaaaatttctcattataaa-aaaaattaaa |
8353332 |
T |
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