View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2604_low_20 (Length: 387)
Name: NF2604_low_20
Description: NF2604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2604_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 19 - 377
Target Start/End: Original strand, 34190043 - 34190401
Alignment:
| Q |
19 |
atcacatgcatcatcctcgtgttctcattcagtcattttcactctaaacacaacaaaatccacaccctctttcttaaactacgaaacttgtagcatcctt |
118 |
Q |
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| T |
34190043 |
atcacatgcatcatcctcgtgttctcattcagtcattttcactctaaacacaacaaaatccacaccctctttcttaaactacgaaacttgtagcatcctt |
34190142 |
T |
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| Q |
119 |
ttcaacaccaaatcttattacataaaccaaaacatacctttcatgttttcaaacaattgaaaaccaaacaacaaagaacaatggattcatgtccatatgt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34190143 |
ttcaacaccaaatcttattacataaaccaaaacatacctttcatgttttcaaacaattgaaaaccaaacaacaaagaacaatggattcatgtccatatgt |
34190242 |
T |
|
| Q |
219 |
acgtttaacagttgaatcattagccctaaaccttccatcaccaacaaaaccatcaccactttcacgtattcatccttcaacaacaacaataccatgtttt |
318 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34190243 |
acgcttaacagttgaatcattagccctaaaccttccatcaccaacaaaaccatcaccactttcacgtattcatccttcaacaacaacaataccatgtttt |
34190342 |
T |
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| Q |
319 |
tgcaccattcatataccaaatttcccttctcaaaccacacttcttccactctcttcatc |
377 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34190343 |
tgcaccattcatataccaaatttcccttctcaaaccacacttcttccactctcttcatc |
34190401 |
T |
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