View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2604_low_24 (Length: 370)
Name: NF2604_low_24
Description: NF2604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2604_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 3 - 355
Target Start/End: Complemental strand, 39571406 - 39571054
Alignment:
| Q |
3 |
atcatcaagcttggtgcagtgctgaagaatgtgatatatttgcattcagtgcagctttggaggctttttgattttgatgcaaagttatgcaatgtatata |
102 |
Q |
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| T |
39571406 |
atcatcaagcttggtgcagtgctgaagaatgtgatatatttgcattcggtgcagctttggaggctttttgattttgatgcaaagttatgcaatgtatata |
39571307 |
T |
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| Q |
103 |
tgccctgatatcaactaattagcatatcattataatgaattgaatttttgacaattataatggattgattctatatgattagagtttacttctctgtgcc |
202 |
Q |
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| T |
39571306 |
tgccccgatatcaactaattagcatatcattataatgaattgaatttttgacaattataatggattgattctatatgattagagtttacttctctgtgcc |
39571207 |
T |
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| Q |
203 |
cactctaaaatgacgttgcagacgcattaaattttatttttacactgtattatctgtatattagaattgtgtcctgcattactcaaaccagtagcagaag |
302 |
Q |
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| T |
39571206 |
cactctaaaatgacgttgcagacgcattaaattttatttttacactgtattatctgtatattagaattgtgtcttgcagtactcaaaccagtagcagaag |
39571107 |
T |
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| Q |
303 |
aacaacgaactagacatacacaaacaagagtaggaagataagattcaagttct |
355 |
Q |
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| T |
39571106 |
aacaacgaactagacatacacaaacaagagtaggaagataagattcaagttct |
39571054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 11 - 216
Target Start/End: Original strand, 39581892 - 39582106
Alignment:
| Q |
11 |
gcttggtgcagtgctgaagaatgtgatatatttgcattcagtgcagctttggaggctttttgattttgatgcaaagttatgcaatgtatatatgccctga |
110 |
Q |
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| T |
39581892 |
gcttggtgctgcgcagaagattgtgatatatttgcgcttggtgcagctttggaggctttttgattttgatgcaaaattatgtgatgtatatatgcactaa |
39581991 |
T |
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| Q |
111 |
tatcaac----taattagcatatcattataatgaattga---atttttgac--aattataatggattgattctatatgattagagtttacttctctgtgc |
201 |
Q |
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| T |
39581992 |
catcaactaattaattagcttatcattacagtggatttatatttttttgacaaaattataatggatcgattctatttgattagagctttcttctctgtgt |
39582091 |
T |
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| Q |
202 |
ccactctaaaatgac |
216 |
Q |
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| T |
39582092 |
ccattctaaaatgac |
39582106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 3 - 134
Target Start/End: Original strand, 39585523 - 39585654
Alignment:
| Q |
3 |
atcatcaagcttggtgcagtgctgaagaatgtgatatatttgcattcagtgcagctttggaggctttttgattttgatgcaaagttatgcaatgtatata |
102 |
Q |
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| T |
39585523 |
atcatcaagcatggtgcaacactgaagattgtgatatatttgcattaggtggagctttggaggctttttgatttggatgcaaaattatgtgatgtatata |
39585622 |
T |
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| Q |
103 |
tgccctgatatcaactaattagcatatcatta |
134 |
Q |
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| T |
39585623 |
tgcactaacatcaactaattagcttataatta |
39585654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 3 - 105
Target Start/End: Original strand, 39575323 - 39575425
Alignment:
| Q |
3 |
atcatcaagcttggtgcagtgctgaagaatgtgatatatttgcattcagtgcagctttggaggctttttgattttgatgcaaagttatgcaatgtatata |
102 |
Q |
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|||||| ||||||||||| ||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
39575323 |
atcatcgagcttggtgcaacactgaagattgtgatatatttgcattaggtggagctttggaggctttttgattttgatgcaaaaatatgtgatgtatata |
39575422 |
T |
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| Q |
103 |
tgc |
105 |
Q |
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||| |
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| T |
39575423 |
tgc |
39575425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 189
Target Start/End: Complemental strand, 39565920 - 39565742
Alignment:
| Q |
11 |
gcttggtgcagtgctgaagaatgtgatatatttgcattcagtgcagctttggaggctttttgattttgatgcaaagttatgcaatgtatatatgccctga |
110 |
Q |
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| T |
39565920 |
gcttggtgctgcgcagaagagtgtgatatatttgcgtt---tggcgctttggaggctttttagttttgatgcaagattatgctacgtatataggcactaa |
39565824 |
T |
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| Q |
111 |
tatcaactaattagcatatcattataatgaattga-atttttgac--aattataatggattgattctatatgattagagttt |
189 |
Q |
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|||||||||||||| |||||||||||| ||||| |||||||| ||||||| |||||| |||||| || ||||||||| |
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| T |
39565823 |
catcaactaattagcttatcattataatagattgatttttttgacaaaattatagtggattaattctaaattgttagagttt |
39565742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 39568581 - 39568508
Alignment:
| Q |
11 |
gcttggtgcagtgctgaagaatgtgatatatttgcattcagtgcagctttggaggctttttgattttgatgcaa |
84 |
Q |
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||||||||||| || ||||| |||||| ||||||| | |||||||||| |||||||||| |||||||||||| |
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| T |
39568581 |
gcttggtgcagcgccgaagattgtgatttatttgcgcttggtgcagctttagaggctttttaattttgatgcaa |
39568508 |
T |
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