View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2604_low_25 (Length: 367)

Name: NF2604_low_25
Description: NF2604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2604_low_25
NF2604_low_25
[»] chr4 (13 HSPs)
chr4 (19-362)||(53713567-53713911)
chr4 (255-333)||(32818405-32818483)
chr4 (246-333)||(35065026-35065113)
chr4 (246-339)||(9064194-9064287)
chr4 (248-348)||(9134575-9134675)
chr4 (246-362)||(39386596-39386712)
chr4 (255-333)||(26617440-26617518)
chr4 (279-340)||(1616387-1616447)
chr4 (248-348)||(33456339-33456439)
chr4 (249-340)||(50061656-50061747)
chr4 (261-318)||(29779104-29779161)
chr4 (181-242)||(55187083-55187144)
chr4 (281-353)||(8604637-8604709)
[»] chr8 (9 HSPs)
chr8 (246-333)||(37684368-37684455)
chr8 (246-362)||(13384660-13384776)
chr8 (246-360)||(38868461-38868575)
chr8 (260-362)||(32927869-32927971)
chr8 (246-355)||(4662916-4663025)
chr8 (252-332)||(26668521-26668601)
chr8 (249-340)||(44141078-44141169)
chr8 (246-338)||(463143-463235)
chr8 (281-333)||(11572493-11572545)
[»] chr6 (8 HSPs)
chr6 (181-338)||(4910802-4910963)
chr6 (260-333)||(26280582-26280655)
chr6 (260-355)||(6654103-6654198)
chr6 (260-332)||(765422-765494)
chr6 (260-347)||(5724649-5724738)
chr6 (263-338)||(28052929-28053004)
chr6 (248-313)||(3809628-3809693)
chr6 (260-340)||(3482023-3482103)
[»] chr5 (9 HSPs)
chr5 (260-362)||(42858085-42858187)
chr5 (246-316)||(29922857-29922928)
chr5 (260-343)||(34250376-34250459)
chr5 (281-362)||(18851088-18851169)
chr5 (281-362)||(38845441-38845522)
chr5 (266-333)||(9818717-9818784)
chr5 (279-316)||(5465521-5465558)
chr5 (279-340)||(39097242-39097303)
chr5 (246-354)||(14299293-14299401)
[»] chr1 (5 HSPs)
chr1 (246-333)||(28083923-28084010)
chr1 (290-355)||(11049257-11049322)
chr1 (290-333)||(3515825-3515868)
chr1 (248-355)||(47321920-47322026)
chr1 (260-333)||(6021781-6021854)
[»] chr2 (9 HSPs)
chr2 (252-362)||(33019162-33019272)
chr2 (260-333)||(2002730-2002803)
chr2 (246-333)||(12037024-12037111)
chr2 (181-333)||(31453278-31453433)
chr2 (246-328)||(6327109-6327191)
chr2 (285-333)||(5533066-5533114)
chr2 (299-362)||(33502253-33502316)
chr2 (291-333)||(44439262-44439304)
chr2 (281-333)||(42740975-42741027)
[»] scaffold0168 (1 HSPs)
scaffold0168 (246-353)||(31789-31896)
[»] chr7 (3 HSPs)
chr7 (252-338)||(22195833-22195919)
chr7 (290-332)||(28725088-28725130)
chr7 (279-331)||(41386852-41386904)
[»] chr3 (8 HSPs)
chr3 (261-316)||(7742195-7742250)
chr3 (255-333)||(35058333-35058411)
chr3 (263-316)||(32111974-32112027)
chr3 (258-333)||(37335069-37335144)
chr3 (260-314)||(7717375-7717429)
chr3 (279-316)||(40339222-40339259)
chr3 (260-333)||(44771671-44771744)
chr3 (260-316)||(41115414-41115470)
[»] scaffold0361 (1 HSPs)
scaffold0361 (260-301)||(14180-14221)


Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 19 - 362
Target Start/End: Complemental strand, 53713911 - 53713567
Alignment:
Q  19 aaagctatactcatagaattcattattggttgaaatgaaagtaaagatgatgcgacacgatggcatctgtttttggtttaatcccactgcaaataaaata 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  53713911 aaagctatactcatagaattcattattggttgaaatgaaagtaaagatgatgcgacacgatggcatctgtttttgttttaatcccactgcaaataaaata 53713812  T
Q  119 attaatccaataatttgcaactgctgcatatttgtggaatcctataatcctaagaaattaaa-gtatgcttgattccacttttaaagtgatcagaattga 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  53713811 attaatccaataatttgcaactgctgcatatttgtggaatcctataatcctaagaaattaaatgtatgcttgattccacttttaaagtgatcataattga 53713712  T
Q  218 ttatgaatgtataggattgatttttacatggttgttgtcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttc 317  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||     
T  53713711 ttatgaatgtataggattgatttttatatggttgttgtcgaatagaattaattttgtttcaagaattaattttacttgaagctacgatttgtagcttttg 53713612  T
Q  318 attctaaaattgatttccacacaaatatatatagttcatctcact 362  Q
    |||||| |||||| ||||||| |||||||||||||||| ||||||    
T  53713611 attctataattgacttccacataaatatatatagttcaactcact 53713567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 255 - 333
Target Start/End: Complemental strand, 32818483 - 32818405
Alignment:
Q  255 tcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgattt 333  Q
    |||| |||||||||||||| ||| |||||| ||| || ||||||||| |||||||||||||| |||||| |||||||||    
T  32818483 tcgagtagaattgattttgcctccagaattgattctatttgaagctagaatttgtagcttttgattctagaattgattt 32818405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 333
Target Start/End: Original strand, 35065026 - 35065113
Alignment:
Q  246 tggttgttgtcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgattt 333  Q
    |||||| | |||| |||||||||||||| ||||| |||| ||||||||||||||||  ||||||  ||||| |||||| |||||||||    
T  35065026 tggttgctttcgagtagaattgattttgcctcaataattgattttacttgaagctagtatttgtgacttttgattctagaattgattt 35065113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 339
Target Start/End: Original strand, 9064194 - 9064287
Alignment:
Q  246 tggttgttgtcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccacac 339  Q
    ||||||||||||||||||||| | |||| | | | |||| ||| |||||||| ||| ||||||||| |||| |||||| ||||||||| |||||    
T  9064194 tggttgttgtcgaatagaattaaatttgccaccataattgattctacttgaaactagaatttgtagtttttgattctagaattgattttcacac 9064287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 248 - 348
Target Start/End: Original strand, 9134575 - 9134675
Alignment:
Q  248 gttgttgtcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccacacaaatatat 347  Q
    |||||| |||| | |||||||||||   || |||||| ||  |||||||||||| |||||||||||||| ||| || ||||||||| ||||||||| |||    
T  9134575 gttgttatcgagtggaattgattttacttccagaattgatcctacttgaagctaaaatttgtagcttttgattttagaattgattttcacacaaatttat 9134674  T
Q  348 a 348  Q
    |    
T  9134675 a 9134675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 246 - 362
Target Start/End: Original strand, 39386596 - 39386712
Alignment:
Q  246 tggttgttgtcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccacacaaatat 345  Q
    ||||||||| | | ||||||||||| |||||| | |||| ||| ||||| |||||| ||||| || | ||| |||||| ||||||||| |||||| ||||    
T  39386596 tggttgttgacaagtagaattgattctgtctctaaaattgattctacttaaagctaaaatttataacatttaattctataattgattttcacacacatat 39386695  T
Q  346 atatagttcatctcact 362  Q
     || |||||| ||||||    
T  39386696 ttaaagttcaactcact 39386712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 333
Target Start/End: Original strand, 26617440 - 26617518
Alignment:
Q  255 tcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgattt 333  Q
    |||| |||||||||||||| ||| | || | ||| |||||||||||| ||| |||||||||| ||| ||||||||||||    
T  26617440 tcgagtagaattgattttgcctccaaaaatgattctacttgaagctagaatctgtagcttttgattataaaattgattt 26617518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 340
Target Start/End: Original strand, 1616387 - 1616447
Alignment:
Q  279 agaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccacaca 340  Q
    |||||| ||| ||||| ||||||||||||||||||||| |||||| |||||||| |||||||    
T  1616387 agaattgattctactt-aagctacaatttgtagcttttgattctagaattgattcccacaca 1616447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 348
Target Start/End: Original strand, 33456339 - 33456439
Alignment:
Q  248 gttgttgtcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccacacaaatatat 347  Q
    |||| |||||| |||||||||||  ||||| |||||| ||| || || || |||  ||||||||||||| |||||| ||||||||| |||| |||| |||    
T  33456339 gttggtgtcgactagaattgattccgtctctagaatttattctatttaaaactatgatttgtagcttttgattctataattgattttcacataaatctat 33456438  T
Q  348 a 348  Q
    |    
T  33456439 a 33456439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 249 - 340
Target Start/End: Complemental strand, 50061747 - 50061656
Alignment:
Q  249 ttgttgtcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccacaca 340  Q
    |||||||| | |||||||||||||| ||| | |||| ||| ||||||||| ||  |||||||| |||| |||||| | ||||||| ||||||    
T  50061747 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtagtttttgattctagagttgattttcacaca 50061656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 318
Target Start/End: Complemental strand, 29779161 - 29779104
Alignment:
Q  261 agaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttca 318  Q
    |||||||||||||  |  |||||| ||| |||||||||||| ||||||||||||||||    
T  29779161 agaattgattttgcttgtagaattgattctacttgaagctagaatttgtagcttttca 29779104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 55187144 - 55187083
Alignment:
Q  181 gtatgcttgattccacttttaaagtgatcagaattgattatgaatgtataggattgattttt 242  Q
    ||||| ||| ||||||||||||||||| || ||||||||||||| || ||| |||| |||||    
T  55187144 gtatgtttggttccacttttaaagtgaccataattgattatgaaagtgtagaattgcttttt 55187083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 353
Target Start/End: Complemental strand, 8604709 - 8604637
Alignment:
Q  281 aattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccacacaaatatatatagtt 353  Q
    |||| ||| ||||||||||||  ||||||||||||  |||||| ||||||||| |||||| | || |||||||    
T  8604709 aattgattctacttgaagctaagatttgtagctttcgattctagaattgattttcacacacaaatttatagtt 8604637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 246 - 333
Target Start/End: Original strand, 37684368 - 37684455
Alignment:
Q  246 tggttgttgtcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgattt 333  Q
    |||||||||| || |||||||||||||||||| |||||| ||| ||||||||| ||  |||||| |||||| ||||||||||||||||    
T  37684368 tggttgttgtggagtagaattgattttgtctccagaattgattctacttgaagttaggatttgtggcttttgattctaaaattgattt 37684455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 246 - 362
Target Start/End: Complemental strand, 13384776 - 13384660
Alignment:
Q  246 tggttgttgtcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccacacaaatat 345  Q
    ||||||||||||| | |||||  || | |||| | |||| ||| || ||||||||| |||||||||||||| |||||| ||||||||| |||||| | ||    
T  13384776 tggttgttgtcgagtcgaatttgttctttctccaaaattgattctatttgaagctaaaatttgtagcttttgattctagaattgattttcacacacaaat 13384677  T
Q  346 atatagttcatctcact 362  Q
     ||||||||| ||||||    
T  13384676 ttatagttcaactcact 13384660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 246 - 360
Target Start/End: Original strand, 38868461 - 38868575
Alignment:
Q  246 tggttgttgtcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccacacaaatat 345  Q
    ||||||||||||| || |||||||  || ||| | |||| ||| ||||||||||||  |||||||||||||  ||||| ||||||||| |||||| | ||    
T  38868461 tggttgttgtcgagtaaaattgatgatgcctctaaaattgattctacttgaagctaagatttgtagcttttggttctataattgattttcacacacaaat 38868560  T
Q  346 atatagttcatctca 360  Q
     ||||||||| ||||    
T  38868561 ttatagttcaactca 38868575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 362
Target Start/End: Original strand, 32927869 - 32927971
Alignment:
Q  260 tagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccacacaaatatatatagttcatctc 359  Q
    |||||||||||||| ||||| | || ||| ||||||||||||  ||||||||||||| ||| || |||| ||||  ||||| | || ||||||||| |||    
T  32927869 tagaattgattttgcctcaatagttgattctacttgaagctaggatttgtagcttttgattatagaattcatttttacacacaaatttatagttcaactc 32927968  T
Q  360 act 362  Q
    |||    
T  32927969 act 32927971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 355
Target Start/End: Complemental strand, 4663025 - 4662916
Alignment:
Q  246 tggttgttgtcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccacacaaatat 345  Q
    |||||| | ||| |||||||||||||||  ||  ||||| ||| ||||||||||||  |||||||||||||  ||||| |||||||||  ||||| | ||    
T  4663025 tggttgctttcggatagaattgattttgcatccggaatttattctacttgaagctaggatttgtagcttttgtttctagaattgatttttacacacaaat 4662926  T
Q  346 atatagttca 355  Q
     |||||||||    
T  4662925 gtatagttca 4662916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 332
Target Start/End: Original strand, 26668521 - 26668601
Alignment:
Q  252 ttgtcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatt 332  Q
    ||||||| ||||||||||| || ||| | |||| ||| ||||| || ||||||||||||| |||| |||||| ||||||||    
T  26668521 ttgtcgagtagaattgattctgcctccataattgattctacttaaaactacaatttgtagttttttattctataattgatt 26668601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 249 - 340
Target Start/End: Complemental strand, 44141169 - 44141078
Alignment:
Q  249 ttgttgtcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccacaca 340  Q
    |||||||| | |||||||||||||| ||| | |||| ||| ||||||||| ||  |||||||| |||| |||||| | ||||||| ||||||    
T  44141169 ttgttgtccagtagaattgattttgcctccaaaattgattctacttgaagttaggatttgtagtttttgattctagagttgattttcacaca 44141078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 338
Target Start/End: Complemental strand, 463235 - 463143
Alignment:
Q  246 tggttgttgtcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccaca 338  Q
    ||||||||||| | ||||||||||||||| |  |||||||||| || ||||| |||  |||||||| || | |||||| |||| |||| ||||    
T  463235 tggttgttgtctagtagaattgattttgtttttagaattaattctatttgaaactaagatttgtagtttatgattctagaatttattttcaca 463143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 333
Target Start/End: Complemental strand, 11572545 - 11572493
Alignment:
Q  281 aattaattttacttgaagctacaatttgtagcttttcattctaaaattgattt 333  Q
    |||| ||| |||||||||||| ||||||||| |||| ||| ||||||||||||    
T  11572545 aattgattatacttgaagctaaaatttgtagattttgattataaaattgattt 11572493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 338
Target Start/End: Original strand, 4910802 - 4910963
Alignment:
Q  181 gtatgcttgattccacttttaaagtgatcagaattgattatgaatgtataggattgatttttacatg----gttgttgtcgaatagaattgattttgtct 276  Q
    ||||| ||| ||||||||||| || ||  | |||||||| ||||||| ||| ||||||| | |||||    ||||| ||| | ||||||||||| || ||    
T  4910802 gtatgtttggttccacttttagagagactataattgattctgaatgtgtagaattgattctgacatgtttggttgtcgtcaattagaattgattctgcct 4910901  T
Q  277 caagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccaca 338  Q
    ||| |||| ||| ||||||||||||  ||||||||||||| |||||| ||||||||| ||||    
T  4910902 caaaaattgattctacttgaagctatgatttgtagcttttgattctagaattgattttcaca 4910963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 260 - 333
Target Start/End: Original strand, 26280582 - 26280655
Alignment:
Q  260 tagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgattt 333  Q
    |||||||||||||| |||||||||| |||  ||||||||||| ||||||||| |||| |||| |||||||||||    
T  26280582 tagaattgattttgcctcaagaattgattccacttgaagctagaatttgtagtttttgattccaaaattgattt 26280655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 260 - 355
Target Start/End: Complemental strand, 6654198 - 6654103
Alignment:
Q  260 tagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccacacaaatatatatagttca 355  Q
    |||||||||||||  ||  |||||||||| ||||||||||||  ||||||||||||| |||||| | ||||||| |||||| | || |||||||||    
T  6654198 tagaattgatttttccttcagaattaattctacttgaagctaggatttgtagcttttaattctagatttgattttcacacagaaatttatagttca 6654103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 260 - 332
Target Start/End: Complemental strand, 765494 - 765422
Alignment:
Q  260 tagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatt 332  Q
    ||||| || ||||| |||||||||| ||| ||||||||||||  ||||||||||||| |||||| ||||||||    
T  765494 tagaactggttttggctcaagaattgattctacttgaagctatgatttgtagcttttgattctagaattgatt 765422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 347
Target Start/End: Complemental strand, 5724738 - 5724649
Alignment:
Q  260 tagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattga--tttccacacaaatatat 347  Q
    |||||||||||||| ||| | |||| ||| ||||||||||||  ||||||| ||||| |||||| ||||||  ||| |||||||||||||    
T  5724738 tagaattgattttgcctccaaaattgattctacttgaagctaggatttgtaactttttattctataattgatttttacacacaaatatat 5724649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 338
Target Start/End: Original strand, 28052929 - 28053004
Alignment:
Q  263 aattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccaca 338  Q
    |||||||| |||||  |||||| ||| ||||||||| || ||||||||| | || |||||||||||||||| ||||    
T  28052929 aattgattgtgtctatagaattgattatacttgaagatagaatttgtagttattaattctaaaattgattttcaca 28053004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 313
Target Start/End: Original strand, 3809628 - 3809693
Alignment:
Q  248 gttgttgtcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagct 313  Q
    |||||| | ||||| ||||||||||||| | |||||||||| ||||||||| ||  ||||||||||    
T  3809628 gttgttttggaataaaattgattttgtcactagaattaattctacttgaagttaagatttgtagct 3809693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 340
Target Start/End: Original strand, 3482023 - 3482103
Alignment:
Q  260 tagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccacaca 340  Q
    ||||||||||| |||||  |||||| ||| ||||||||| ||  ||||||||| ||| ||| || ||||||||| ||||||    
T  3482023 tagaattgattctgtctttagaattgattatacttgaagttaagatttgtagcctttgattttagaattgattttcacaca 3482103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 260 - 362
Target Start/End: Original strand, 42858085 - 42858187
Alignment:
Q  260 tagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccacacaaatatatatagttcatctc 359  Q
    ||||||| |||||| ||| |||||| ||||||||||||| ||  ||||| ||||||| |||||| ||||||||| |||||| | || ||||||||| |||    
T  42858085 tagaattcattttgactctagaattgattttacttgaagttaggatttggagcttttaattctataattgattttcacacacaaatttatagttcaactc 42858184  T
Q  360 act 362  Q
    |||    
T  42858185 act 42858187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 316
Target Start/End: Original strand, 29922857 - 29922928
Alignment:
Q  246 tggttgttgtcgaatagaattgattttgtctcaagaattaatttt-acttgaagctacaatttgtagctttt 316  Q
    |||||||| ||||  |||||||||||||||||||||||| ||||| ||||||||||| || | |||||||||    
T  29922857 tggttgttctcgagcagaattgattttgtctcaagaattgattttaacttgaagctaaaaatcgtagctttt 29922928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 343
Target Start/End: Complemental strand, 34250459 - 34250376
Alignment:
Q  260 tagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccacacaaat 343  Q
    ||||||||||| || ||| |||||| ||| ||||||| |||| || ||||||||||| |||||| ||||| ||| |||||||||    
T  34250459 tagaattgattatgcctctagaattgattctacttgatgctagaaattgtagcttttgattctacaattgtttttcacacaaat 34250376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 362
Target Start/End: Complemental strand, 18851169 - 18851088
Alignment:
Q  281 aattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccacacaaatatatatagttcatctcact 362  Q
    |||| ||| ||||||||||||  ||||||||||||| ||| || ||||||||| |||||| |||| ||||||| | ||||||    
T  18851169 aattgattctacttgaagctatgatttgtagcttttgattatagaattgattttcacacacatatttatagttaaactcact 18851088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 362
Target Start/End: Original strand, 38845441 - 38845522
Alignment:
Q  281 aattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccacacaaatatatatagttcatctcact 362  Q
    |||| ||| ||||||||||||  |||||||| |||| |||||| ||||||||| |||||| | |||||||||| | ||||||    
T  38845441 aattgattctacttgaagctaagatttgtagtttttgattctagaattgattttcacacacaaatatatagttaaactcact 38845522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 333
Target Start/End: Original strand, 9818717 - 9818784
Alignment:
Q  266 tgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgattt 333  Q
    |||||||| ||| | |||| ||| ||||||||||||  ||||||||||||| |||||| |||||||||    
T  9818717 tgattttgcctccataattgattctacttgaagctatgatttgtagcttttgattctagaattgattt 9818784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 316
Target Start/End: Complemental strand, 5465558 - 5465521
Alignment:
Q  279 agaattaattttacttgaagctacaatttgtagctttt 316  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  5465558 agaattaattctacttgaagctacaatttgtagttttt 5465521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 340
Target Start/End: Original strand, 39097242 - 39097303
Alignment:
Q  279 agaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccacaca 340  Q
    |||||| ||| |||||||||||| |||||||| ||||| ||| || ||||||||| ||||||    
T  39097242 agaattgattctacttgaagctaaaatttgtaacttttaattatataattgattttcacaca 39097303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 354
Target Start/End: Original strand, 14299293 - 14299401
Alignment:
Q  246 tggttgttgtcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccacacaaatat 345  Q
    |||||||| ||||||| |||||||||||  |  | |||| ||| ||||||||| ||  |||||||| |||| |||||| ||||| ||| |||||| | ||    
T  14299293 tggttgttttcgaataaaattgattttgcttttaaaattgattctacttgaagttaggatttgtagttttttattctagaattggttttcacacataaat 14299392  T
Q  346 atatagttc 354  Q
     ||||||||    
T  14299393 ttatagttc 14299401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 246 - 333
Target Start/End: Complemental strand, 28084010 - 28083923
Alignment:
Q  246 tggttgttgtcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgattt 333  Q
    |||||||| |||| |||||||||||||||||    |||| ||| |||||||||||| |||||||||||||| |||||| |||| ||||    
T  28084010 tggttgttttcgagtagaattgattttgtcttcgtaattgattctacttgaagctagaatttgtagcttttgattctataattaattt 28083923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 290 - 355
Target Start/End: Original strand, 11049257 - 11049322
Alignment:
Q  290 tacttgaagctacaatttgtagcttttcattctaaaattgatttccacacaaatatatatagttca 355  Q
    ||||||||||||  ||||||||||||| ||||||||||||||||  ||||| | || |||||||||    
T  11049257 tacttgaagctaggatttgtagcttttgattctaaaattgatttttacacacaaatttatagttca 11049322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 290 - 333
Target Start/End: Original strand, 3515825 - 3515868
Alignment:
Q  290 tacttgaagctacaatttgtagcttttcattctaaaattgattt 333  Q
    |||||||||||| || |||||||||||||||||| |||||||||    
T  3515825 tacttgaagctagaaattgtagcttttcattctagaattgattt 3515868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 248 - 355
Target Start/End: Complemental strand, 47322026 - 47321920
Alignment:
Q  248 gttgttgtcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccacacaaatatat 347  Q
    ||||||||||| ||||||||||| ||  || | |||| ||| |||||||||||| |||||| || |||| |||||| ||||||||| || ||| | || |    
T  47322026 gttgttgtcgagtagaattgattctgcttctataattgattatacttgaagctagaatttgcag-ttttaattctagaattgattttcatacacaaattt 47321928  T
Q  348 atagttca 355  Q
    ||||||||    
T  47321927 atagttca 47321920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 333
Target Start/End: Original strand, 6021781 - 6021854
Alignment:
Q  260 tagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgattt 333  Q
    |||||||||||||| ||| |||||  ||| ||||||||||||  || |||||||||| |||||| ||| |||||    
T  6021781 tagaattgattttgcctctagaatcgattctacttgaagctaggatatgtagcttttgattctataatagattt 6021854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 252 - 362
Target Start/End: Complemental strand, 33019272 - 33019162
Alignment:
Q  252 ttgtcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccacacaaatatatatag 351  Q
    ||||||| || |||||||| || ||| |||||| ||| || ||||||||| ||||||||||||||  || || ||||||||| |||||| | || |||||    
T  33019272 ttgtcgagtataattgattctgcctctagaattgattatatttgaagctagaatttgtagcttttggttttagaattgattttcacacataaatttatag 33019173  T
Q  352 ttcatctcact 362  Q
    |||| ||||||    
T  33019172 ttcaactcact 33019162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 333
Target Start/End: Complemental strand, 2002803 - 2002730
Alignment:
Q  260 tagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgattt 333  Q
    |||||||||||||| ||| |||  | ||| ||||||||||||  |||||||| |||||||||||||||||||||    
T  2002803 tagaattgattttgcctccagacctgattctacttgaagctaggatttgtagtttttcattctaaaattgattt 2002730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 333
Target Start/End: Original strand, 12037024 - 12037111
Alignment:
Q  246 tggttgttgtcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgattt 333  Q
    ||||||||||||  |||||||| || ||| || |||||| ||| || ||||| ||| |||||||||||||| |||||| |||||||||    
T  12037024 tggttgttgtcgtgtagaattggttatgtgtctagaattgattctagttgaaactaaaatttgtagcttttgattctacaattgattt 12037111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 333
Target Start/End: Original strand, 31453278 - 31453433
Alignment:
Q  181 gtatgcttgattccacttttaaagtgatcagaattgattatgaatgtataggattgatttttacatg----gttgttgtcgaatagaattgattttgtct 276  Q
    ||||| |||| ||||||||||||| ||||| |||||||||||||||| ||  ||| ||| |  ||||    |||| ||| || ||||||| |||||| ||    
T  31453278 gtatgtttgactccacttttaaagagatcataattgattatgaatgtgtat-attaattctgtcatgtttggttgatgttgagtagaatttattttgcct 31453376  T
Q  277 caagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgattt 333  Q
    | | |||| ||| |||||||||||| |||||||  ||||| ||||| ||||||||||    
T  31453377 ctataattgattctacttgaagctaaaatttgttccttttgattctgaaattgattt 31453433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 328
Target Start/End: Complemental strand, 6327191 - 6327109
Alignment:
Q  246 tggttgttgtcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaatt 328  Q
    |||||||||| || || |||||||| ||| || |||||| ||| |||||||| ||| ||||||||| |||| |||||||||||    
T  6327191 tggttgttgttgattaaaattgattatgtttctagaattgattctacttgaaactaaaatttgtagtttttgattctaaaatt 6327109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 333
Target Start/End: Complemental strand, 5533114 - 5533066
Alignment:
Q  285 aattttacttgaagctacaatttgtagcttttcattctaaaattgattt 333  Q
    |||| ||||||||||||| ||||||||||||| ||||| ||||||||||    
T  5533114 aattctacttgaagctactatttgtagcttttgattcttaaattgattt 5533066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 362
Target Start/End: Original strand, 33502253 - 33502316
Alignment:
Q  299 ctacaatttgtagcttttcattctaaaattgatttccacacaaatatatatagttcatctcact 362  Q
    |||| ||||||| ||||| ||||||||||||||||  ||||| |||| ||||||||| ||||||    
T  33502253 ctactatttgtaacttttgattctaaaattgatttttacacacatatttatagttcaactcact 33502316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 333
Target Start/End: Original strand, 44439262 - 44439304
Alignment:
Q  291 acttgaagctacaatttgtagcttttcattctaaaattgattt 333  Q
    ||||||||||| |||||| ||||||| ||||||||||||||||    
T  44439262 acttgaagctaaaatttggagcttttgattctaaaattgattt 44439304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 333
Target Start/End: Original strand, 42740975 - 42741027
Alignment:
Q  281 aattaattttacttgaagctacaatttgtagcttttcattctaaaattgattt 333  Q
    |||| ||| ||||||||||||  ||||||||||||| |||||| |||||||||    
T  42740975 aattgattctacttgaagctaagatttgtagcttttgattctagaattgattt 42741027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 353
Target Start/End: Original strand, 31789 - 31896
Alignment:
Q  246 tggttgttgtcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccacacaaatat 345  Q
    ||||||||||||| || |||||||| || ||| | |||| ||| ||||||||||||  ||||||||||||| ||| |  ||||||||| |||| | ||||    
T  31789 tggttgttgtcgagtaaaattgattctgcctccaaaattgattatacttgaagctaggatttgtagcttttgattattgaattgattttcacatacatat 31888  T
Q  346 atatagtt 353  Q
     |||||||    
T  31889 ttatagtt 31896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 252 - 338
Target Start/End: Original strand, 22195833 - 22195919
Alignment:
Q  252 ttgtcgaatagaattgattttgt-ctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgatttccaca 338  Q
    ||||||| ||||||||||| ||| ||||| |||| ||||||||| ||||||  ||||||| ||||| |||||||||||||||| ||||    
T  22195833 ttgtcgagtagaattgattatgtcctcaa-aattgattttactttaagctatgatttgtaacttttgattctaaaattgattttcaca 22195919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 332
Target Start/End: Complemental strand, 28725130 - 28725088
Alignment:
Q  290 tacttgaagctacaatttgtagcttttcattctaaaattgatt 332  Q
    |||||||||||| |||||||||||||| |||||| ||||||||    
T  28725130 tacttgaagctagaatttgtagcttttgattctataattgatt 28725088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 331
Target Start/End: Complemental strand, 41386904 - 41386852
Alignment:
Q  279 agaattaattttacttgaagctacaatttgtagcttttcattctaaaattgat 331  Q
    |||||| ||| ||||||||||||  ||||||||||||| |||||| |||||||    
T  41386904 agaattgattctacttgaagctaggatttgtagcttttaattctagaattgat 41386852  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 316
Target Start/End: Complemental strand, 7742250 - 7742195
Alignment:
Q  261 agaattgattttgtctcaagaattaattttacttgaagctacaatttgtagctttt 316  Q
    ||||||||||||||||  | ||||||||||||||||| ||| ||||||||||||||    
T  7742250 agaattgattttgtctatataattaattttacttgaaactaaaatttgtagctttt 7742195  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 333
Target Start/End: Original strand, 35058333 - 35058411
Alignment:
Q  255 tcgaatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgattt 333  Q
    |||| |||||||||||||| |||||||||| ||| |||||| ||||| || ||  ||||||| |||||| |||||||||    
T  35058333 tcgagtagaattgattttgcctcaagaattgattctacttggagctagaaattcgagcttttgattctagaattgattt 35058411  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 316
Target Start/End: Original strand, 32111974 - 32112027
Alignment:
Q  263 aattgattttgtctcaagaattaattttacttgaagctacaatttgtagctttt 316  Q
    |||||||||||| |  |||||| ||| |||||||||||||||||||||||||||    
T  32111974 aattgattttgtatgtagaattgattctacttgaagctacaatttgtagctttt 32112027  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 258 - 333
Target Start/End: Complemental strand, 37335144 - 37335069
Alignment:
Q  258 aatagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgattt 333  Q
    |||| ||||||||||| ||| |||||| |||||||| |||| || || | ||||||||| |||||| |||||||||    
T  37335144 aataaaattgattttgcctcgagaattgattttactagaagttagaaatcgtagcttttgattctagaattgattt 37335069  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 314
Target Start/End: Complemental strand, 7717429 - 7717375
Alignment:
Q  260 tagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagctt 314  Q
    |||||||||||||| ||| |||||| ||| |||||||||||| || |||||||||    
T  7717429 tagaattgattttgcctccagaattgattctacttgaagctagaaattgtagctt 7717375  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 316
Target Start/End: Original strand, 40339222 - 40339259
Alignment:
Q  279 agaattaattttacttgaagctacaatttgtagctttt 316  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  40339222 agaattgattctacttgaagctacaatttgtagctttt 40339259  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 333
Target Start/End: Original strand, 44771671 - 44771744
Alignment:
Q  260 tagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagcttttcattctaaaattgattt 333  Q
    |||||||| ||||| |||  ||||| ||| ||| | || ||| |||||||||||||| ||||||||||||||||    
T  44771671 tagaattggttttgcctccggaattgattctacctaaatctagaatttgtagcttttgattctaaaattgattt 44771744  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 316
Target Start/End: Complemental strand, 41115470 - 41115414
Alignment:
Q  260 tagaattgattttgtctcaagaattaattttacttgaagctacaatttgtagctttt 316  Q
    ||||||||||||||  |  |||||| ||| |||||||||||| ||||||||||||||    
T  41115470 tagaattgattttgcttgtagaattgattctacttgaagctagaatttgtagctttt 41115414  T

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Target: scaffold0361 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 301
Target Start/End: Complemental strand, 14221 - 14180
Alignment:
Q  260 tagaattgattttgtctcaagaattaattttacttgaagcta 301  Q
    |||||||||||||||| |||||||| ||| ||||||||||||    
T  14221 tagaattgattttgtcacaagaattgattctacttgaagcta 14180  T

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