View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2604_low_26 (Length: 363)
Name: NF2604_low_26
Description: NF2604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2604_low_26 |
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| [»] scaffold0468 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 14 - 348
Target Start/End: Complemental strand, 7789124 - 7788786
Alignment:
| Q |
14 |
tcttacaaaaaacggttgactgacttcatcgatttcgatgtcttcttc---atcatcattatccttcaatttgaattctcatcaatggatctacgacgtg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
7789124 |
tcttacaaaaaacggttgactgacttcatcgatttcgatgtcttcttcttcatcatcattatccttcaatttgaattctcatcaatggatctacgacatg |
7789025 |
T |
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| Q |
111 |
ttcataaatttcagaggtgaagacacacgtaagagcttggtttctcatctatatgctgctctatcaagcatgggaatcaacacttttcttgacgacaaaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7789024 |
ttcataaatttcagaggtgaagacacacgtaagagcttggtttctcatctatatgctgctctatcaagcatgggaatcaacacttttcttgacgacgaaa |
7788925 |
T |
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| Q |
211 |
agcttaaaaagggttggccagttcatctag-nnnnnnngaggtaagaacttttgcgcgctaataaatatatttttccccttttgcaacatctttttggta |
309 |
Q |
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| T |
7788924 |
agcttaaaaagggttggccagttcatctagaaaaaagagaggtaagaacttttgcgcgctaataaatatatatttccccttttgcaacatctttttggta |
7788825 |
T |
|
| Q |
310 |
acaaatgnnnnnnnttgttaccggttacacctttaattt |
348 |
Q |
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||||||| ||||||||||||||||||||||||| |
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| T |
7788824 |
acaaatgaaaaaaattgttaccggttacacctttaattt |
7788786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 48 - 223
Target Start/End: Complemental strand, 6908914 - 6908742
Alignment:
| Q |
48 |
tcgatgtcttcttcatcatcattatccttcaatttgaattctcatcaatggatctacgacgtgttcataaatttcagaggtgaagacacacgtaagagct |
147 |
Q |
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| T |
6908914 |
tcgatgtcatcttcatcatcat---ccttcaatttgatttctcaacaatggatctacgacgtgttcataaatttcagaggggaagacacgcgaaagagcc |
6908818 |
T |
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| Q |
148 |
tggtttctcatctatatgctgctctatcaagcatgggaatcaacacttttcttgacgacaaaaagcttaaaaaggg |
223 |
Q |
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| T |
6908817 |
tggtttctcatctatatgctgctctctcaaacgcgggaatcaacacttttcttgatgatgaaaagcttaaaaaggg |
6908742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 202
Target Start/End: Complemental strand, 32413925 - 32413818
Alignment:
| Q |
95 |
atggatctacgacgtgttcataaatttcagaggtgaagacacacgtaagagcttggtttctcatctatatgctgctctatcaagcatgggaatcaacact |
194 |
Q |
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| T |
32413925 |
atggatatacaaagtgttcatcaattttagaggcgaggacactcgtaaaaattttgtttctcatctcgatgctgctctctcaaacttgggagttaacact |
32413826 |
T |
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| Q |
195 |
tttcttga |
202 |
Q |
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|||||||| |
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| T |
32413825 |
tttcttga |
32413818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0468 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold0468
Description:
Target: scaffold0468; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 28 - 223
Target Start/End: Complemental strand, 9268 - 9071
Alignment:
| Q |
28 |
gttgactgacttcatcgatttcgatgtcttcttcatcatcattatc---cttcaatttgaattctcatcaatggatctacgacgtgttcataaatttcag |
124 |
Q |
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||||||||||||||| ||| |||||||||| |||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9268 |
gttgactgacttcataaatt-cgatgtcttcatcatcatcgtcatcaaccttcaatttgaattctcatcaatggatctacgacgtgttcataaatttcag |
9170 |
T |
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| Q |
125 |
aggtgaagacacacgtaagagcttggtttctcatctatatgctgctctatcaagcatgggaatcaacacttttcttgacgacaaaaagcttaaaaaggg |
223 |
Q |
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| T |
9169 |
aggtgaagacacccgcaagagcttggtttctcatctgtatgctgctctattgaacgcgggaatcaacacttttcttgacgatgaaaagcttaaaaaggg |
9071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 90 - 205
Target Start/End: Original strand, 30414565 - 30414680
Alignment:
| Q |
90 |
catcaatggatctacgacgtgttcataaatttcagaggtgaagacacacgtaagagcttggtttctcatctatatgctgctctatcaagcatgggaatca |
189 |
Q |
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||||||||||| |||||||||||||||||||||||||| || |||| ||||| ||||||||||||||||| || |||||||| |||| | | |||||| |
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| T |
30414565 |
catcaatggatatacgacgtgttcataaatttcagaggggacgacagtcgtaatagcttggtttctcatctgtacgctgctctctcaaacgcgcgaatca |
30414664 |
T |
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| Q |
190 |
acacttttcttgacga |
205 |
Q |
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| T |
30414665 |
acacatttcttgacga |
30414680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 3270215 - 3270175
Alignment:
| Q |
183 |
ggaatcaacacttttcttgacgacaaaaagcttaaaaaggg |
223 |
Q |
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| T |
3270215 |
ggaatcaacacttttcttgacgacaaaaagcttgaaaaggg |
3270175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 169
Target Start/End: Complemental strand, 3265342 - 3265276
Alignment:
| Q |
103 |
acgacgtgttcataaatttcagaggtgaagacacacgtaagagcttggtttctcatctatatgctgc |
169 |
Q |
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| T |
3265342 |
acgacgtgttcattagttttagaggagaagatactcgtaagacgttcgtttctcatctatatgctgc |
3265276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 172
Target Start/End: Complemental strand, 3395238 - 3395158
Alignment:
| Q |
92 |
tcaatggatctacgacgtgttcataaatttcagaggtgaagacacacgtaagagcttggtttctcatctatatgctgctct |
172 |
Q |
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||||||||| ||||||||||||| ||||| ||||| |||| || || |||| || ||||||||||| ||||||||||| |
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| T |
3395238 |
tcaatggatacacgacgtgttcatcaattttagagggaaagatactcgcaagacttttgtttctcatctctatgctgctct |
3395158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 169
Target Start/End: Complemental strand, 3401372 - 3401292
Alignment:
| Q |
89 |
tcatcaatggatctacgacgtgttcataaatttcagaggtgaagacacacgtaagagcttggtttctcatctatatgctgc |
169 |
Q |
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||||| || |||||| ||||||||||||| ||||||||| || || || || |||| || ||||||||||| |||||||| |
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| T |
3401372 |
tcatccattgatctatgacgtgttcataagtttcagaggggaggatactcgaaagactttcgtttctcatctctatgctgc |
3401292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 223
Target Start/End: Complemental strand, 14770802 - 14770682
Alignment:
| Q |
103 |
acgacgtgttcataaatttcagaggtgaagacacacgtaagagcttggtttctcatctatatgctgctctatcaagcatgggaatcaacacttttcttga |
202 |
Q |
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||||||||||||| ||||||||||| |||||||||| |||| | | || || ||||| || |||||||| |||| | ||||| ||||||||||| || |
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| T |
14770802 |
acgacgtgttcatcaatttcagaggccaagacacacgcaagaacatcgtatcacatctctacgctgctctttcaaacgccggaattaacacttttctcga |
14770703 |
T |
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| Q |
203 |
cgacaaaaagcttaaaaaggg |
223 |
Q |
| |
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| || | ||||||| |||||| |
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| T |
14770702 |
caacgagaagcttagaaaggg |
14770682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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