View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2604_low_30 (Length: 330)
Name: NF2604_low_30
Description: NF2604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2604_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 6550583 - 6550273
Alignment:
| Q |
1 |
atagtacaaactagtaaactacaaagtataaacaaattaacaaaatcttcttttcaatttgaatatttgatcaaaacaagagaacaaggttatgctgaaa |
100 |
Q |
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| T |
6550583 |
atagtacaaactaataaactacaaagtataaacaaattaacaaaatcttcttttcaatttgaatatttgatcaaaacaagagaacaaggttatgctgaaa |
6550484 |
T |
|
| Q |
101 |
aaatgagtcacttaaataatgtagagtacgactcataatatcataaactttaggtgtgnnnnnnnttggtcttaagggctatgtatgtccatcgaaaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
6550483 |
aaatgagtcacttaaataatgtagagtacgactcataatatcataaactttaggtgtgaaaaaaattggtcttaagggctatgtatgtccatcgaaaaga |
6550384 |
T |
|
| Q |
201 |
tgttttagcaatgacatcctacagctccatcacacttttaatcatacaaccccatgtacaatgtaatatctcacctttgtaatcatttgatgagatgcaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6550383 |
tgttttagcaatgacatcctacagctccatcacacttttaatcatacaaccccatgtacaatgtaatatctcacctttgtaatcatttgatgagatgcaa |
6550284 |
T |
|
| Q |
301 |
cactgcgcttc |
311 |
Q |
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||||| ||||| |
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| T |
6550283 |
cactgagcttc |
6550273 |
T |
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