View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2604_low_31 (Length: 329)
Name: NF2604_low_31
Description: NF2604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2604_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 8 - 312
Target Start/End: Complemental strand, 2796181 - 2795877
Alignment:
| Q |
8 |
agataatactgcaactcactatggccagtaacaacaattccctcaccacatgagtcatactgtggccttccggcacgacccaacatctgcatcacatcaa |
107 |
Q |
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| T |
2796181 |
agataatactgcaactcactatggccagtaacaacaattcccataccacatgagtcatactgtggccttccggcacgacccaacatctgcatcacatcaa |
2796082 |
T |
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| Q |
108 |
gaggactcaattcagtccatgctcccttttcaggattataaatctttgtccctttaattataaccgtatgagccgggagattcacaccccaggcaagggt |
207 |
Q |
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| T |
2796081 |
gaggactcaattcagtccatgctcctctttcaggattataaatctttgtccctttaattataaccgtatgagccgggagattcacaccccaggcaagggt |
2795982 |
T |
|
| Q |
208 |
agcagtggataccaaaacttgaacatgtccagaagcgaaaagatcctcaacgagctggcgatctgttcttgtcataccagcatgatgaatagcaaaacca |
307 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2795981 |
agcagtggataccaaaacttgaacatgtccagaagcaaaaagatcctcaacgagctggcgatctgttcttgtcataccagcatgatgaatagcaaaacca |
2795882 |
T |
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| Q |
308 |
tatgg |
312 |
Q |
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||||| |
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| T |
2795881 |
tatgg |
2795877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 11 - 309
Target Start/End: Complemental strand, 29263691 - 29263393
Alignment:
| Q |
11 |
taatactgcaactcactatggccagtaacaacaattccctcaccacatgagtcatactgtggccttccggcacgacccaacatctgcatcacatcaagag |
110 |
Q |
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| T |
29263691 |
taatattgcaactcactgtggcccgtaagaataattccctcaccataagagtcatattgaggccttccggcacgacccaacatctgcataacgtcaagtg |
29263592 |
T |
|
| Q |
111 |
gactcaattcagtccatgctcccttttcaggattataaatctttgtccctttaattataaccgtatgagccgggagattcacaccccaggcaagggtagc |
210 |
Q |
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| T |
29263591 |
gactcagttcagtccaggcccccttttcgggattataaatctgtgtccctttaattataacagtgtgagctggaagattcacaccccatgcaagggtggc |
29263492 |
T |
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| Q |
211 |
agtggataccaaaacttgaacatgtccagaagcgaaaagatcctcaacgagctggcgatctgttcttgtcataccagcatgatgaatagcaaaaccata |
309 |
Q |
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||||||||||||||||||| |||||||| |||||| ||||||||||| || ||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
29263491 |
agtggataccaaaacttgagcatgtccatcagcgaacagatcctcaacaagttggcgatctgtcctcgtcataccagcatgatgaatagcaaaaccata |
29263393 |
T |
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