View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2604_low_4 (Length: 637)
Name: NF2604_low_4
Description: NF2604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2604_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 276 - 622
Target Start/End: Complemental strand, 49689073 - 49688727
Alignment:
| Q |
276 |
ttataaaccaattgctactcgaattaattctaagagaatgaacgtagataagtatcaatattgtagaatataggtgtaattctgctgtggttaaatattt |
375 |
Q |
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| T |
49689073 |
ttataaaccaattgctactcgaattaattataagagaatgaacgtagataagtatcaatattgtagaatataggtgcaattctgctgtggttaaatattt |
49688974 |
T |
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| Q |
376 |
actgtaacagctttatattatgcttttggataaaacataaaggaaatgtgctaacatgttaattttgaagtttagtatccattcttgaattggtcaatcg |
475 |
Q |
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| T |
49688973 |
acggtaacagctttatattatgcttttggataaaacataaaggaaatgtgctaacatgttaattttgaagtttagcatccattcttgaattggtcaatcg |
49688874 |
T |
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| Q |
476 |
gctcaaagaatcactagttagaaacttgcatctatgagaactacgaagcaaaccaaaataagttacgctaaattcaaaaatgaaatcttgtagaaaactg |
575 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
49688873 |
gctcaaagaatcactagttagaaacttgcatctatgagaactacgaagcaaaccaaaataagttacgctaaattcaaaaatgaaatcttgtagaaatctg |
49688774 |
T |
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| Q |
576 |
cagagaaacaaaattctagtgataaatgcaattataaggacacatgt |
622 |
Q |
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| T |
49688773 |
cagagaaacaaaattctagtgatcaatgcaattataaggacacatgt |
49688727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 7 - 279
Target Start/End: Complemental strand, 49689359 - 49689093
Alignment:
| Q |
7 |
gaacacatacctaacatttgcctcttcttcatctccggtgacgactctgctttaatttgcagttaccaacaggaaaatgactgcattcttcgcgagtcgc |
106 |
Q |
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| T |
49689359 |
gaacacatacctaacatttgcctcttcttcatctccggtgacgactctgcttt-----gcagttaccaacaggaaaatgactgcattcttcgcgagtcgc |
49689265 |
T |
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| Q |
107 |
aaatgttggacgatgctcaggtaagtcattcttgctactctatccattggagtatattaatctgatttcccaagctatccccggcgcatgaagtgnnnnn |
206 |
Q |
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| T |
49689264 |
aaatgttggacgatgctcaggtaagtcattcttgctactctatccattggagtatattaatatgatttcccaagctatccccggcgcatgaagtg-tttt |
49689166 |
T |
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| Q |
207 |
nnncttacttttcactcattagagatggaatccatgatgaccacgtgcttaaaggacaaccgtgtcacattat |
279 |
Q |
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| T |
49689165 |
tttcttacttttcactcattagagatggaatccatgatgaccacatgcttaaaggacaaccgtgtcacattat |
49689093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 573 - 614
Target Start/End: Complemental strand, 49711479 - 49711438
Alignment:
| Q |
573 |
ctgcagagaaacaaaattctagtgataaatgcaattataagg |
614 |
Q |
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| T |
49711479 |
ctgcagagaaataaaattctagtgataattgcaatcataagg |
49711438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 424 - 507
Target Start/End: Complemental strand, 49684475 - 49684391
Alignment:
| Q |
424 |
tgctaacatgttaattttgaagtttagtatccattcttgaattggtcaa-tcggctcaaagaatcactagttagaaacttgcatc |
507 |
Q |
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| T |
49684475 |
tgctaatatgtaaatttcgaagttcagtatccagttttgaattggtcaattcgactcaaagaattatcagtcaggaacttgcatc |
49684391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 418 - 470
Target Start/End: Complemental strand, 20059557 - 20059505
Alignment:
| Q |
418 |
gaaatgtgctaacatgttaattttgaagtttagtatccattcttgaattggtc |
470 |
Q |
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| T |
20059557 |
gaaatatgctaacatgttaattttgaagttcagtatccagtcttgaatcggtc |
20059505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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