View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2604_low_43 (Length: 268)

Name: NF2604_low_43
Description: NF2604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2604_low_43
NF2604_low_43
[»] chr8 (5 HSPs)
chr8 (50-250)||(5915102-5915304)
chr8 (17-58)||(23936305-23936346)
chr8 (17-58)||(45308480-45308521)
chr8 (26-58)||(7477372-7477404)
chr8 (17-57)||(45163708-45163748)
[»] chr3 (16 HSPs)
chr3 (17-58)||(40988624-40988665)
chr3 (17-58)||(32772027-32772068)
chr3 (17-58)||(36315815-36315856)
chr3 (17-58)||(51224952-51224993)
chr3 (19-58)||(35495195-35495233)
chr3 (19-58)||(49002748-49002787)
chr3 (17-58)||(2181341-2181382)
chr3 (17-58)||(5636654-5636695)
chr3 (17-58)||(10732394-10732435)
chr3 (17-58)||(17258177-17258218)
chr3 (17-58)||(32770677-32770718)
chr3 (17-58)||(33944856-33944897)
chr3 (17-58)||(50381553-50381594)
chr3 (17-58)||(51226497-51226538)
chr3 (26-58)||(47284538-47284570)
chr3 (26-58)||(54716753-54716785)
[»] chr6 (11 HSPs)
chr6 (17-58)||(11623185-11623226)
chr6 (17-58)||(22515999-22516040)
chr6 (17-58)||(28574553-28574594)
chr6 (19-58)||(12799039-12799078)
chr6 (17-58)||(2018564-2018605)
chr6 (17-58)||(4793823-4793864)
chr6 (17-58)||(12203918-12203959)
chr6 (17-58)||(29873070-29873110)
chr6 (17-58)||(29874450-29874491)
chr6 (18-58)||(2017199-2017239)
chr6 (26-58)||(12730582-12730614)
[»] chr2 (13 HSPs)
chr2 (17-58)||(14983947-14983988)
chr2 (17-58)||(43741748-43741789)
chr2 (19-58)||(16143695-16143734)
chr2 (17-58)||(11363908-11363949)
chr2 (17-58)||(21631844-21631885)
chr2 (17-58)||(23049811-23049852)
chr2 (17-58)||(28719343-28719384)
chr2 (17-58)||(43890126-43890167)
chr2 (17-58)||(44077096-44077137)
chr2 (17-58)||(44078536-44078577)
chr2 (17-57)||(12802452-12802492)
chr2 (17-57)||(14816045-14816085)
chr2 (26-58)||(37343687-37343719)
[»] chr1 (9 HSPs)
chr1 (18-58)||(51549387-51549427)
chr1 (3-58)||(51462192-51462247)
chr1 (17-58)||(7058370-7058411)
chr1 (17-58)||(21258945-21258986)
chr1 (17-58)||(39276992-39277033)
chr1 (17-58)||(50503727-50503768)
chr1 (17-58)||(50504797-50504838)
chr1 (21-58)||(51548382-51548419)
chr1 (26-58)||(13344422-13344454)
[»] chr7 (4 HSPs)
chr7 (19-58)||(42438023-42438062)
chr7 (17-58)||(30505128-30505169)
chr7 (17-57)||(10691324-10691364)
chr7 (17-57)||(43091692-43091732)
[»] scaffold0854 (1 HSPs)
scaffold0854 (17-58)||(3374-3415)
[»] scaffold0005 (1 HSPs)
scaffold0005 (17-58)||(22816-22857)
[»] chr5 (5 HSPs)
chr5 (17-58)||(38162619-38162660)
chr5 (17-57)||(6464323-6464363)
chr5 (26-58)||(10169050-10169082)
chr5 (26-58)||(16039747-16039779)
chr5 (17-57)||(36361059-36361099)
[»] chr4 (8 HSPs)
chr4 (17-54)||(1140616-1140653)
chr4 (17-58)||(6033859-6033900)
chr4 (17-58)||(8143059-8143100)
chr4 (17-58)||(14816854-14816895)
chr4 (17-58)||(33168119-33168160)
chr4 (26-58)||(26858379-26858411)
chr4 (17-57)||(30064028-30064068)
chr4 (17-57)||(53831178-53831218)
[»] scaffold0047 (2 HSPs)
scaffold0047 (26-58)||(63070-63102)
scaffold0047 (26-58)||(63310-63342)


Alignment Details
Target: chr8 (Bit Score: 108; Significance: 3e-54; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 50 - 250
Target Start/End: Complemental strand, 5915304 - 5915102
Alignment:
Q  50 taattaaaagtgagtttaaggaatgaaatgatttatgtctagatgcatttacgtgaaagtaagnnnnnnnnnnnnnnnn--acaagtacacgaaagatgt 147  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||                  | |||||| ||||||||||    
T  5915304 taattaaaagtgagtttaaggaatgaaattatttatgtctagatgcatttatgtgaaactaagttttttttttttttttttataagtacgcgaaagatgt 5915205  T
Q  148 cggaccaccaaaaaggaatcggacaatcccaaataggttagaaccatctgatgatttcaactaggttgacactaccaaccaagatgacaacaactcagat 247  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  5915204 cggaccaccaaaaagaaattggacaatcccaaataggttagaaccatctgacgatttcaactaggttgacactaccaatcaagatgacaacaactcagat 5915105  T
Q  248 cca 250  Q
    |||    
T  5915104 cca 5915102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 23936305 - 23936346
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    |||||||||||||||||||||||| | |||||||||||||||    
T  23936305 tgtttcaagaagttgcgattttggccccctaactaattaaaa 23936346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 45308480 - 45308521
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    |||||||||||||||||||||||  | |||||||||||||||    
T  45308480 tgtttcaagaagttgcgattttgaacccctaactaattaaaa 45308521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 7477372 - 7477404
Alignment:
Q  26 aagttgcgattttggtcacctaactaattaaaa 58  Q
    ||||||||||||||||| |||||||||||||||    
T  7477372 aagttgcgattttggtcccctaactaattaaaa 7477404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 45163748 - 45163708
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaa 57  Q
    |||||||||||||||||||||||| | ||||||||| ||||    
T  45163748 tgtttcaagaagttgcgattttggccccctaactaaataaa 45163708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 40988624 - 40988665
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  40988624 tgtttcaagaagttgcgattttggtcccctaactaattaaaa 40988665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 32772068 - 32772027
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    ||||||||||||||| |||||||||| |||||||||||||||    
T  32772068 tgtttcaagaagttgtgattttggtcccctaactaattaaaa 32772027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 36315815 - 36315856
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    |||||||||||||||||||||||| | |||||||||||||||    
T  36315815 tgtttcaagaagttgcgattttggacccctaactaattaaaa 36315856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 51224952 - 51224993
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    |||||||||||||||||||||||| | |||||||||||||||    
T  51224952 tgtttcaagaagttgcgattttggccccctaactaattaaaa 51224993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 35495233 - 35495195
Alignment:
Q  19 tttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  35495233 tttcaagaagttgcgattttggtc-cctaactaattaaaa 35495195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 49002787 - 49002748
Alignment:
Q  19 tttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  49002787 tttcaagaagttgcgattttggacccctaactaattaaaa 49002748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 2181341 - 2181382
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    |||||||||||||||||||||||| | |||||| ||||||||    
T  2181341 tgtttcaagaagttgcgattttggacccctaacgaattaaaa 2181382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 5636695 - 5636654
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    |||||||||||||||||||||||| |  ||||||||||||||    
T  5636695 tgtttcaagaagttgcgattttggacctctaactaattaaaa 5636654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 10732435 - 10732394
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    |||||||||||||||||||||| | | |||||||||||||||    
T  10732435 tgtttcaagaagttgcgattttcgacccctaactaattaaaa 10732394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 17258218 - 17258177
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    |||||||||||||||||||||||| | |||||| ||||||||    
T  17258218 tgtttcaagaagttgcgattttggacccctaacaaattaaaa 17258177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 32770677 - 32770718
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    |||||||||||||||||||||||| | |||||||||| ||||    
T  32770677 tgtttcaagaagttgcgattttggactcctaactaatcaaaa 32770718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 33944897 - 33944856
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    |||||||||||||||||||||||  | |||||||||||||||    
T  33944897 tgtttcaagaagttgcgattttgaacccctaactaattaaaa 33944856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 50381594 - 50381553
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    |||||||||||||||||||||||| | | |||||||||||||    
T  50381594 tgtttcaagaagttgcgattttggacccttaactaattaaaa 50381553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 51226538 - 51226497
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    ||||| |||||||||||||||||| | |||||||||||||||    
T  51226538 tgttttaagaagttgcgattttggacccctaactaattaaaa 51226497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 47284570 - 47284538
Alignment:
Q  26 aagttgcgattttggtcacctaactaattaaaa 58  Q
    ||||||||||||||||| |||||||||||||||    
T  47284570 aagttgcgattttggtcccctaactaattaaaa 47284538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 54716785 - 54716753
Alignment:
Q  26 aagttgcgattttggtcacctaactaattaaaa 58  Q
    ||||||||||||||||| |||||||||||||||    
T  54716785 aagttgcgattttggtcccctaactaattaaaa 54716753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 11623185 - 11623226
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    |||||||||||||||||||||||| | |||||||||||||||    
T  11623185 tgtttcaagaagttgcgattttggccccctaactaattaaaa 11623226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 22515999 - 22516040
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    |||||||||||||||||||||||| | |||||||||||||||    
T  22515999 tgtttcaagaagttgcgattttggacccctaactaattaaaa 22516040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 28574594 - 28574553
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    |||||||||||||||||||||||| | |||||||||||||||    
T  28574594 tgtttcaagaagttgcgattttggccccctaactaattaaaa 28574553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 12799078 - 12799039
Alignment:
Q  19 tttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    ||||||||||||||||||||||||||||||| || |||||    
T  12799078 tttcaagaagttgcgattttggtcacctaacaaaataaaa 12799039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 2018605 - 2018564
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    |||||||||||||||||||||||| | ||||| |||||||||    
T  2018605 tgtttcaagaagttgcgattttggccccctaattaattaaaa 2018564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 4793864 - 4793823
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    ||||||||| |||||||||||||| | |||||||||||||||    
T  4793864 tgtttcaagcagttgcgattttggacccctaactaattaaaa 4793823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 12203918 - 12203959
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    |||||||||||||||||||||||  | |||||||||||||||    
T  12203918 tgtttcaagaagttgcgattttgaccccctaactaattaaaa 12203959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 29873070 - 29873110
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    |||||||||||||||||||||||| | |||||||||||||||    
T  29873070 tgtttcaagaagttgcgattttgg-cccctaactaattaaaa 29873110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 29874491 - 29874450
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    |||||||||||||||||||||| | | |||||||||||||||    
T  29874491 tgtttcaagaagttgcgatttttgacccctaactaattaaaa 29874450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 2017199 - 2017239
Alignment:
Q  18 gtttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    |||||||||||||| |||||||| | |||||||||||||||    
T  2017199 gtttcaagaagttgtgattttggacccctaactaattaaaa 2017239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 12730614 - 12730582
Alignment:
Q  26 aagttgcgattttggtcacctaactaattaaaa 58  Q
    ||||||||||||||||| |||||||||||||||    
T  12730614 aagttgcgattttggtcccctaactaattaaaa 12730582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 14983988 - 14983947
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    ||||| |||||||||||||||||||| |||||||||||||||    
T  14983988 tgttttaagaagttgcgattttggtcccctaactaattaaaa 14983947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 43741789 - 43741748
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    ||||||||||||||||||||||| || |||||||||||||||    
T  43741789 tgtttcaagaagttgcgattttgatcccctaactaattaaaa 43741748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 16143695 - 16143734
Alignment:
Q  19 tttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  16143695 tttcaagaagttgcgattttggccccctaactaattaaaa 16143734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 11363908 - 11363949
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    ||||||||||||||||||||||||   |||||||||||||||    
T  11363908 tgtttcaagaagttgcgattttggctccctaactaattaaaa 11363949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 21631844 - 21631885
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    ||||||| |||||||||||||||| | |||||||||||||||    
T  21631844 tgtttcatgaagttgcgattttggccccctaactaattaaaa 21631885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 23049852 - 23049811
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    |||||||||||||||||||||||| |  ||||||||||||||    
T  23049852 tgtttcaagaagttgcgattttggacctctaactaattaaaa 23049811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 28719343 - 28719384
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    ||||| |||||||||||||||||| | |||||||||||||||    
T  28719343 tgttttaagaagttgcgattttggccccctaactaattaaaa 28719384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 43890126 - 43890167
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    ||||| |||||||||||||||||||| | |||||||||||||    
T  43890126 tgtttgaagaagttgcgattttggtcccttaactaattaaaa 43890167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 44077096 - 44077137
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    ||||||||||||||| |||||||| | |||||||||||||||    
T  44077096 tgtttcaagaagttgtgattttggacccctaactaattaaaa 44077137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 44078577 - 44078536
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    ||||| |||||||||||||||||||  |||||||||||||||    
T  44078577 tgttttaagaagttgcgattttggttccctaactaattaaaa 44078536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 12802492 - 12802452
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaa 57  Q
    ||||||||||||||||||||||||||  |||||||| ||||    
T  12802492 tgtttcaagaagttgcgattttggtcttctaactaaataaa 12802452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 14816085 - 14816045
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaa 57  Q
    |||||||||||||||||||||||| | ||||||||| ||||    
T  14816085 tgtttcaagaagttgcgattttggccccctaactaaataaa 14816045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 37343687 - 37343719
Alignment:
Q  26 aagttgcgattttggtcacctaactaattaaaa 58  Q
    ||||||||||||||||| |||||||||||||||    
T  37343687 aagttgcgattttggtcccctaactaattaaaa 37343719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 51549427 - 51549387
Alignment:
Q  18 gtttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  51549427 gtttcaagaagttgcgattttggacccctaactaattaaaa 51549387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 51462192 - 51462247
Alignment:
Q  3 acttttgaccccactgtttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    ||||||| ||||  |||||||||||||||||||||||| |  ||||||||||||||    
T  51462192 acttttggcccctatgtttcaagaagttgcgattttggacctctaactaattaaaa 51462247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 7058411 - 7058370
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    |||||||||||||||||||||||| | ||||||||| |||||    
T  7058411 tgtttcaagaagttgcgattttggacccctaactaagtaaaa 7058370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 21258945 - 21258986
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    ||||| |||||||||||||||||| | |||||||||||||||    
T  21258945 tgttttaagaagttgcgattttggactcctaactaattaaaa 21258986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 39276992 - 39277033
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    ||||| || ||||||||||||||||| |||||||||||||||    
T  39276992 tgtttaaaaaagttgcgattttggtctcctaactaattaaaa 39277033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 50503727 - 50503768
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    ||||| |||||||||||||||||| | |||||||||||||||    
T  50503727 tgttttaagaagttgcgattttggccccctaactaattaaaa 50503768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 50504838 - 50504797
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    ||||| |||||||||||||||||| | |||||||||||||||    
T  50504838 tgttttaagaagttgcgattttggacccctaactaattaaaa 50504797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 51548382 - 51548419
Alignment:
Q  21 tcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  51548382 tcaagaagttgcgattttcgtcccctaactaattaaaa 51548419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 13344454 - 13344422
Alignment:
Q  26 aagttgcgattttggtcacctaactaattaaaa 58  Q
    ||||||||||||||||| |||||||||||||||    
T  13344454 aagttgcgattttggtcccctaactaattaaaa 13344422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 42438062 - 42438023
Alignment:
Q  19 tttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  42438062 tttcaagaagttgcgattttggccccctaactaattaaaa 42438023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 30505169 - 30505128
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    |||||||||||||||||||||||  | |||||||||||||||    
T  30505169 tgtttcaagaagttgcgattttgtactcctaactaattaaaa 30505128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 10691324 - 10691364
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaa 57  Q
    |||||||||||||||||||||||| | ||||||||| ||||    
T  10691324 tgtttcaagaagttgcgattttggccccctaactaaataaa 10691364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 43091692 - 43091732
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaa 57  Q
    ||||| |||||||||||||||| ||||||||| ||||||||    
T  43091692 tgttttaagaagttgcgattttagtcacctaattaattaaa 43091732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0854 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0854
Description:

Target: scaffold0854; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 3415 - 3374
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    ||||| |||||||||||||||||| | |||||||||||||||    
T  3415 tgttttaagaagttgcgattttggccccctaactaattaaaa 3374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 22816 - 22857
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    |||||| ||||||||||||||||| | |||||||||||||||    
T  22816 tgtttctagaagttgcgattttggacccctaactaattaaaa 22857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 38162619 - 38162660
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    ||||||||||||||| |||||||| | |||||||||||||||    
T  38162619 tgtttcaagaagttgtgattttggacccctaactaattaaaa 38162660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 6464363 - 6464323
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaa 57  Q
    |||||||||||||||||||||||| | ||||||||| ||||    
T  6464363 tgtttcaagaagttgcgattttggccccctaactaaataaa 6464323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 10169050 - 10169082
Alignment:
Q  26 aagttgcgattttggtcacctaactaattaaaa 58  Q
    ||||||||||||||||| |||||||||||||||    
T  10169050 aagttgcgattttggtcccctaactaattaaaa 10169082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 16039779 - 16039747
Alignment:
Q  26 aagttgcgattttggtcacctaactaattaaaa 58  Q
    ||||||||||||||||| |||||||||||||||    
T  16039779 aagttgcgattttggtcccctaactaattaaaa 16039747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 36361059 - 36361099
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaa 57  Q
    ||||||||||||||||||||||| || ||||||||| ||||    
T  36361059 tgtttcaagaagttgcgattttgatcccctaactaaataaa 36361099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 1140653 - 1140616
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaatt 54  Q
    |||||||||||||||||||||||| | |||||||||||    
T  1140653 tgtttcaagaagttgcgattttggacccctaactaatt 1140616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 6033900 - 6033859
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    |||||||||||||||||||||||| |  ||||||||||||||    
T  6033900 tgtttcaagaagttgcgattttggccctctaactaattaaaa 6033859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 8143059 - 8143100
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    ||||| |||||||||||||||||| | |||||||||||||||    
T  8143059 tgttttaagaagttgcgattttggacccctaactaattaaaa 8143100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 14816895 - 14816854
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    |||||| ||||||||||||||||| | |||||||||||||||    
T  14816895 tgtttctagaagttgcgattttggacccctaactaattaaaa 14816854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 33168160 - 33168119
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaaa 58  Q
    ||||| |||||||| ||||||||||| |||||||||||||||    
T  33168160 tgttttaagaagtttcgattttggtcccctaactaattaaaa 33168119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 26858379 - 26858411
Alignment:
Q  26 aagttgcgattttggtcacctaactaattaaaa 58  Q
    ||||||||||||||||| |||||||||||||||    
T  26858379 aagttgcgattttggtcccctaactaattaaaa 26858411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 30064028 - 30064068
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaa 57  Q
    ||||| |||||||||||||||||||| ||||||||| ||||    
T  30064028 tgttttaagaagttgcgattttggtcccctaactaagtaaa 30064068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 53831178 - 53831218
Alignment:
Q  17 tgtttcaagaagttgcgattttggtcacctaactaattaaa 57  Q
    ||||| |||||||||||||||||||| ||||||||| ||||    
T  53831178 tgttttaagaagttgcgattttggtcccctaactaaataaa 53831218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 63070 - 63102
Alignment:
Q  26 aagttgcgattttggtcacctaactaattaaaa 58  Q
    ||||||||||||||||| |||||||||||||||    
T  63070 aagttgcgattttggtcccctaactaattaaaa 63102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 58
Target Start/End: Complemental strand, 63342 - 63310
Alignment:
Q  26 aagttgcgattttggtcacctaactaattaaaa 58  Q
    ||||||||||||||||| |||||||||||||||    
T  63342 aagttgcgattttggtcccctaactaattaaaa 63310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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