View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2604_low_46 (Length: 257)

Name: NF2604_low_46
Description: NF2604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2604_low_46
NF2604_low_46
[»] chr6 (11 HSPs)
chr6 (9-244)||(6272353-6272588)
chr6 (56-223)||(6226164-6226329)
chr6 (48-141)||(6252608-6252701)
chr6 (48-141)||(6259015-6259108)
chr6 (56-141)||(6247426-6247511)
chr6 (54-141)||(6233655-6233742)
chr6 (56-142)||(6280345-6280431)
chr6 (48-141)||(6238608-6238701)
chr6 (56-144)||(6263517-6263605)
chr6 (67-128)||(6282393-6282454)
chr6 (171-223)||(6233582-6233634)
[»] chr2 (1 HSPs)
chr2 (56-141)||(24469305-24469390)
[»] chr7 (1 HSPs)
chr7 (68-122)||(5897117-5897171)


Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 9 - 244
Target Start/End: Complemental strand, 6272588 - 6272353
Alignment:
Q  9 agaatattttttaagattggaggaagagatatataaatatttttgtgtgtgttgataataggaaaaggctagcaacttgaccgacaaggctaccaatgct 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6272588 agaatattttttaagattggaggaagagatatataaatatttttgtgtgtgttgataataggaaaaggctagcaacttgaccgacaaggctagcaatgct 6272489  T
Q  109 gctcagtctgccaaagaatcaatgcaagaggtaacattttctttttacaaaattaagagtatattgcatgaaatagacatatagcacaaattcatggctt 208  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6272488 gctcaatctgccaaagaatcaatgcaagaggtaacattttctttttacaaaattaagagtatattgcatgaaatagacatatagcacaaattcatggctt 6272389  T
Q  209 aaatgtaaaaatgtttgtatttatatatttcttctt 244  Q
    ||||||||||||||||||||||||||||||||||||    
T  6272388 aaatgtaaaaatgtttgtatttatatatttcttctt 6272353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 56 - 223
Target Start/End: Complemental strand, 6226329 - 6226164
Alignment:
Q  56 tgtgttgataataggaaaaggctagcaacttgaccgacaaggctaccaatgctgctcagtctgccaaagaatcaatgcaagaggtaacattttctt-ttt 154  Q
    ||||||||| |||||||||||||||||||||||| || || |||| |||||||||||||||||| | ||||||| |||||||||||||||||| || |||    
T  6226329 tgtgttgattataggaaaaggctagcaacttgacggagaaagctagcaatgctgctcagtctgcaagagaatcattgcaagaggtaacatttttttgttt 6226230  T
Q  155 acaaaattaagagtatattgcatgaaatagacatatagcacaaattcatggcttaaatgtaaaaatgtt 223  Q
    ||||||||||   || |||  ||||||||||| ||||||||||||||||||| |||| |||||||||||    
T  6226229 acaaaattaa---tacattctatgaaatagacttatagcacaaattcatggcctaaaagtaaaaatgtt 6226164  T

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Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 48 - 141
Target Start/End: Complemental strand, 6252701 - 6252608
Alignment:
Q  48 tttttgtgtgtgttgataataggaaaaggctagcaacttgaccgacaaggctaccaatgctgctcagtctgccaaagaatcaatgcaagaggta 141  Q
    ||||| ||||||| ||||||||||||||||||||| | |||  |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6252701 tttttttgtgtgtggataataggaaaaggctagcagcatgatggacaaggctagcaatgctgctcagtctgccaaagaatcaatgcaagaggta 6252608  T

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Target: chr6; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 48 - 141
Target Start/End: Complemental strand, 6259108 - 6259015
Alignment:
Q  48 tttttgtgtgtgttgataataggaaaaggctagcaacttgaccgacaaggctaccaatgctgctcagtctgccaaagaatcaatgcaagaggta 141  Q
    |||||||||| || ||||||||||||||||||||||| |||  |||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  6259108 tttttgtgtgcgtggataataggaaaaggctagcaacatgatggacaaggctagcaatgctgctcagtcagccaaagaatcaatgcaagaggta 6259015  T

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Target: chr6; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 56 - 141
Target Start/End: Complemental strand, 6247511 - 6247426
Alignment:
Q  56 tgtgttgataataggaaaaggctagcaacttgaccgacaaggctaccaatgctgctcagtctgccaaagaatcaatgcaagaggta 141  Q
    ||||| ||| |||||||||||| ||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6247511 tgtgtggatcataggaaaaggccagcaacttgatggacaaggctagcaatgctgctcagtctgccaaagaatcaatgcaagaggta 6247426  T

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Target: chr6; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 54 - 141
Target Start/End: Complemental strand, 6233742 - 6233655
Alignment:
Q  54 tgtgtgttgataataggaaaaggctagcaacttgaccgacaaggctaccaatgctgctcagtctgccaaagaatcaatgcaagaggta 141  Q
    |||||||  |||||||||||||||||||||| |||  |||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  6233742 tgtgtgtgaataataggaaaaggctagcaacatgatggacaaggctagcaatgctgctcagtcggccaaagaatcaatgcaagaggta 6233655  T

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Target: chr6; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 56 - 142
Target Start/End: Complemental strand, 6280431 - 6280345
Alignment:
Q  56 tgtgttgataataggaaaaggctagcaacttgaccgacaaggctaccaatgctgctcagtctgccaaagaatcaatgcaagaggtaa 142  Q
    ||||||||| ||||||||| |||||||||||||  |||||||||| ||||||||| |||||||||||||||||||  ||||||||||    
T  6280431 tgtgttgattataggaaaaagctagcaacttgatggacaaggctagcaatgctgcccagtctgccaaagaatcaacacaagaggtaa 6280345  T

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Target: chr6; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 48 - 141
Target Start/End: Complemental strand, 6238701 - 6238608
Alignment:
Q  48 tttttgtgtgtgttgataataggaaaaggctagcaacttgaccgacaaggctaccaatgctgctcagtctgccaaagaatcaatgcaagaggta 141  Q
    ||||||| ||||| ||||||||||||| ||||||||  |||  ||||||||||  |||||||||||||| |||||||||||||| |||||||||    
T  6238701 tttttgtatgtgtggataataggaaaaagctagcaatatgatggacaaggctagtaatgctgctcagtccgccaaagaatcaatccaagaggta 6238608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 56 - 144
Target Start/End: Complemental strand, 6263605 - 6263517
Alignment:
Q  56 tgtgttgataataggaaaaggctagcaacttgaccgacaaggctaccaatgctgctcagtctgccaaagaatcaatgcaagaggtaaca 144  Q
    |||||||| ||||||||||||||||||||||| | || ||||||| ||| ||||| ||||||||||  ||||||| |||||||||||||    
T  6263605 tgtgttgacaataggaaaaggctagcaacttgtcagataaggctagcaacgctgcccagtctgccagcgaatcaacgcaagaggtaaca 6263517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 128
Target Start/End: Original strand, 6282393 - 6282454
Alignment:
Q  67 taggaaaaggctagcaacttgaccgacaaggctaccaatgctgctcagtctgccaaagaatc 128  Q
    |||||||||||||||| | |||| |||||||||| |||||||||||| ||||| ||||||||    
T  6282393 taggaaaaggctagcaccatgacagacaaggctagcaatgctgctcaatctgcaaaagaatc 6282454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 6233634 - 6233582
Alignment:
Q  171 attgcatgaaatagacatatagcacaaattcatggcttaaatgtaaaaatgtt 223  Q
    |||| |||| |||||  ||||||| ||||||||||| ||||||||||||||||    
T  6233634 attgtatgatatagatttatagcaaaaattcatggcctaaatgtaaaaatgtt 6233582  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 141
Target Start/End: Complemental strand, 24469390 - 24469305
Alignment:
Q  56 tgtgttgataataggaaaaggctagcaacttgaccgacaaggctaccaatgctgctcagtctgccaaagaatcaatgcaagaggta 141  Q
    ||||| |||||||||| |||||||| ||| |||  || ||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  24469390 tgtgtggataataggagaaggctagtaacatgatggataaggctagcaatgttgctcagtctgccaaagaatcaatgcaagaggta 24469305  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 5897171 - 5897117
Alignment:
Q  68 aggaaaaggctagcaacttgaccgacaaggctaccaatgctgctcagtctgccaa 122  Q
    |||| ||| ||||||||||||| |||| ||||| ||||||||||||||| |||||    
T  5897171 aggagaagtctagcaacttgacggacatggctagcaatgctgctcagtccgccaa 5897117  T

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