View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2604_low_48 (Length: 247)

Name: NF2604_low_48
Description: NF2604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2604_low_48
NF2604_low_48
[»] chr2 (2 HSPs)
chr2 (71-247)||(8923034-8923206)
chr2 (15-48)||(8923229-8923262)


Alignment Details
Target: chr2 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 71 - 247
Target Start/End: Complemental strand, 8923206 - 8923034
Alignment:
Q  71 tagtgtgagaaagggaacaacattatcatacctctaagggaaaccaaaaagcaaaggcatgcatgccattaaaggagctaattaattatatcgaacgtgt 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||    
T  8923206 tagtgtgagaaagggaacaacattatcatacctctaagggaaaccaaaaagcaaaggcatgcatgccattaaaggagctaatta----tatcgaacgtgt 8923111  T
Q  171 acaagtaaaaagtgatgcttactccatttcacccgtctatggtgcaataatcaatatatcaactaattaagtgtctc 247  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8923110 acaagtaaaaagtgatgcttacgccatttcacccgtctatggtgcaataatcaatatatcaactaattaagtgtctc 8923034  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 8923262 - 8923229
Alignment:
Q  15 aattaagacccataaaataacataagtattaccc 48  Q
    ||||||||||||||||||||||||||||||||||    
T  8923262 aattaagacccataaaataacataagtattaccc 8923229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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