View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2604_low_50 (Length: 244)
Name: NF2604_low_50
Description: NF2604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2604_low_50 |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 28 - 225
Target Start/End: Complemental strand, 12899720 - 12899520
Alignment:
| Q |
28 |
tataaagttagatgcatttataatatctacctcatcctttcactcccta---caatggccgatgaaacaaagaatctcctccctcaagtattctttcacg |
124 |
Q |
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| T |
12899720 |
tataaagttagatgcatttataatatctacctcatcctttcactccctagtacaatggccgatgaaacaaagaatctcctccctcaagtattctttcacg |
12899621 |
T |
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| Q |
125 |
gtccacccgaattccccgcatacctcaaacccaaaccttatcacaacttccatatcataaacccatcttcccttccctctctccaccaattcatatctac |
224 |
Q |
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| T |
12899620 |
gtccacccgaattccccgcatacctcaaacccaaaccttatcacaacttccatatcataaacccatcttcccttccctctctccaccaattcatatctac |
12899521 |
T |
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| Q |
225 |
c |
225 |
Q |
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| T |
12899520 |
c |
12899520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 12886723 - 12886654
Alignment:
| Q |
152 |
aacccaaaccttatcacaacttccatatcataaacccatcttcccttccctctctccaccaattcatatc |
221 |
Q |
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| T |
12886723 |
aacccaatccttctcataatttccatatcttaaacccttcttctcttcctcctctccaccaattcttatc |
12886654 |
T |
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