View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2604_low_54 (Length: 238)

Name: NF2604_low_54
Description: NF2604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2604_low_54
NF2604_low_54
[»] chr4 (4 HSPs)
chr4 (68-221)||(1429281-1429434)
chr4 (1-71)||(1429456-1429526)
chr4 (25-71)||(9345782-9345828)
chr4 (1-61)||(34332435-34332495)
[»] scaffold0049 (1 HSPs)
scaffold0049 (5-71)||(39953-40019)
[»] chr6 (1 HSPs)
chr6 (5-71)||(2878777-2878843)
[»] chr3 (1 HSPs)
chr3 (18-71)||(12676362-12676415)
[»] chr1 (1 HSPs)
chr1 (15-63)||(16259231-16259279)


Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 68 - 221
Target Start/End: Complemental strand, 1429434 - 1429281
Alignment:
Q  68 gtgtttttgagtctcttcaagcctacggtagaatggcttatccaacacacttgcaaagagagaattggtgagcgagaggatagagaaataagtgtagttg 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1429434 gtgtttttgagtctcttcaagcctacggtagaatggcttatccaacacacttgcaaagagagacttggtgagcgagaggatagagaaataagtgtagttg 1429335  T
Q  168 aaacttttgaattgtccttgctatgcatgccctgattgaattctttgagagtgg 221  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  1429334 aaacttttgaattgtccttgctacgcatgccctgactgaattctttgagagtgg 1429281  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 1429526 - 1429456
Alignment:
Q  1 ctattttttcaaacatatcccacattaacctaagccacattacaaccttaaaagacctctaaagtttgtgt 71  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1429526 ctattttttcaaacatataccacattaacctaagccacattacaaccttaaaagacctctaaaatttgtgt 1429456  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 9345828 - 9345782
Alignment:
Q  25 ttaacctaagccacattacaaccttaaaagacctctaaagtttgtgt 71  Q
    |||||||||||||| ||| |||||||||||||||||||||| |||||    
T  9345828 ttaacctaagccacgttataaccttaaaagacctctaaagtgtgtgt 9345782  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 34332435 - 34332495
Alignment:
Q  1 ctattttttcaaacatatcccacattaacctaagccacattacaaccttaaaagacctcta 61  Q
    ||||||||||||| ||||||||||||||| |||| ||||||| ||  |||||||| |||||    
T  34332435 ctattttttcaaatatatcccacattaacttaagtcacattataagtttaaaagatctcta 34332495  T

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Target: scaffold0049 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 40019 - 39953
Alignment:
Q  5 tttttcaaacatatcccacattaacctaagccacattacaaccttaaaagacctctaaagtttgtgt 71  Q
    |||| |||| ||||||||| ||||||||||||||  || |||||| ||||||||||||||| |||||    
T  40019 ttttccaaatatatcccaccttaacctaagccacgatataaccttgaaagacctctaaagtgtgtgt 39953  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 2878777 - 2878843
Alignment:
Q  5 tttttcaaacatatcccacattaacctaagccacattacaaccttaaaagacctctaaagtttgtgt 71  Q
    |||| |||| ||||||||| ||||||||||||||  || |||||| |||||||| |||||| |||||    
T  2878777 ttttccaaatatatcccactttaacctaagccacgctataaccttgaaagacctttaaagtgtgtgt 2878843  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 12676415 - 12676362
Alignment:
Q  18 tcccacattaacctaagccacattacaaccttaaaagacctctaaagtttgtgt 71  Q
    |||||| ||||||||||||||  || |||||| ||||||||||||||| |||||    
T  12676415 tcccaccttaacctaagccacgctataaccttgaaagacctctaaagtgtgtgt 12676362  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 16259279 - 16259231
Alignment:
Q  15 atatcccacattaacctaagccacattacaaccttaaaagacctctaaa 63  Q
    |||||||||| ||||||||| ||| ||||||| || |||||||||||||    
T  16259279 atatcccacaataacctaagacacgttacaactttgaaagacctctaaa 16259231  T

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