View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2604_low_58 (Length: 232)

Name: NF2604_low_58
Description: NF2604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2604_low_58
NF2604_low_58
[»] chr3 (7 HSPs)
chr3 (1-219)||(39571450-39571668)
chr3 (1-216)||(39581625-39581840)
chr3 (2-216)||(39568634-39568848)
chr3 (5-231)||(39585249-39585475)
chr3 (5-216)||(39565976-39566187)
chr3 (1-216)||(39575064-39575279)
chr3 (2-216)||(39561264-39561478)


Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 39571450 - 39571668
Alignment:
Q  1 cctcttattttgcttctccatctcaacaactgaagctactcttattttaatctccacttccacttctggtgtactgaacataccctctttgcactcactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39571450 cctcttattttgcttctccatctcaacaactgaagctactcttattttaatctccacttccacttctggtgtactgaacataccctctttgcactcactt 39571549  T
Q  101 ccactcaccaaatccattttcaaccannnnnnnaactccatgttttgtgtttcaagaatcaccttccatggaatgtcacctttgccaataagttgtgacc 200  Q
    ||||||||||||||||||||||||||       |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39571550 ccactcaccaaatccattttcaaccatttttttaactccatgttttgtgcttcaagaatcaccttccatggaatgtcacctttgccaataagttgtgacc 39571649  T
Q  201 cccatatcttcctttgtct 219  Q
    |||||||||| ||||||||    
T  39571650 cccatatctttctttgtct 39571668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 39581840 - 39581625
Alignment:
Q  1 cctcttattttgcttctccatctcaacaactgaagctactcttattttaatctccacttccacttctggtgtactgaacataccctctttgcactcactt 100  Q
    ||||||||||||| |||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||| | ||||||    
T  39581840 cctcttattttgcgtctccatctcagaaactgaagctacttttattttaatctccacttccacttctggtgttgtgaacataccctctttgtaatcactt 39581741  T
Q  101 ccactcaccaaatccattttcaaccannnnnnnaactccatgttttgtgtttcaagaatcaccttccatggaatgtcacctttgccaataagttgtgacc 200  Q
    ||||||||||||||||| ||||||||       |||||||||||||||| |||||||||||| ||||||||||| |||  ||| ||||||||||||||||    
T  39581740 ccactcaccaaatccatcttcaaccatttttttaactccatgttttgtgattcaagaatcactttccatggaatctcaaatttcccaataagttgtgacc 39581641  T
Q  201 cccatatcttcctttg 216  Q
    ||||||||||||||||    
T  39581640 cccatatcttcctttg 39581625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 2 - 216
Target Start/End: Original strand, 39568634 - 39568848
Alignment:
Q  2 ctcttattttgcttctccatctcaacaactgaagctactcttattttaatctccacttccacttctggtgtactgaacataccctctttgcactcacttc 101  Q
    |||||||| | ||| ||||||||| |||| ||||| |||||||||||||| ||||||||||||||||||||   ||||||| |||||||||| |||||||    
T  39568634 ctcttattcttcttttccatctcagcaaccgaagccactcttattttaatttccacttccacttctggtgttgggaacatagcctctttgcaatcacttc 39568733  T
Q  102 cactcaccaaatccattttcaaccannnnnnnaactccatgttttgtgtttcaagaatcaccttccatggaatgtcacctttgccaataagttgtgaccc 201  Q
     ||||||||||||||||||||||||       | |||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  39568734 tactcaccaaatccattttcaaccatttttttagctccatgttttgtgattcaagaatcactttccatggaatctcacctttgccaataagttgtgaccc 39568833  T
Q  202 ccatatcttcctttg 216  Q
    ||| |||||||||||    
T  39568834 ccacatcttcctttg 39568848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 5 - 231
Target Start/End: Complemental strand, 39585475 - 39585249
Alignment:
Q  5 ttattttgcttctccatctcaacaactgaagctactcttattttaatctccacttccacttctggtgtactgaacataccctctttgcactcacttccac 104  Q
    |||||||  |||||||||||| |||| ||||  ||| ||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||||||    
T  39585475 ttatttttgttctccatctcagcaaccgaaggaacttttattttaatctccacttccacttctgttgttgtgaacataccctctttgcaatcacttccac 39585376  T
Q  105 tcaccaaatccattttcaaccannnnnnnaactccatgttttgtgtttcaagaatcaccttccatggaatgtcacctttgccaataagttgtgaccccca 204  Q
    |||| || ||||||||||||||       |||||||||||||||| |||||||||||| ||||||||||| |||||||| ||||||||||||||||||||    
T  39585375 tcacaaattccattttcaaccatttttttaactccatgttttgtgattcaagaatcactttccatggaatctcacctttcccaataagttgtgaccccca 39585276  T
Q  205 tatcttcctttgtctctgctcctccac 231  Q
     ||||||||||| ||| ||||| ||||    
T  39585275 catcttcctttgcctcagctccaccac 39585249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 5 - 216
Target Start/End: Original strand, 39565976 - 39566187
Alignment:
Q  5 ttattttgcttctccatctcaacaactgaagctactcttattttaatctccacttccacttctggtgtactgaacataccctctttgcactcacttccac 104  Q
    ||||||||||||||||||||| |||| || |||||| |||||||||||||||||||||||||||| ||  ||||||||||||||||| | ||||| ||||    
T  39565976 ttattttgcttctccatctcagcaaccgaggctacttttattttaatctccacttccacttctggcgttatgaacataccctctttgaaatcactgccac 39566075  T
Q  105 tcaccaaatccattttcaaccannnnnnnaactccatgttttgtgtttcaagaatcaccttccatggaatgtcacctttgccaataagttgtgaccccca 204  Q
    ||||||||||||| ||||||||       ||||||||||||| || |||||||||||| ||||||||||| |||| ||| ||||||||||||||||||||    
T  39566076 tcaccaaatccatcttcaaccatttttttaactccatgttttttgattcaagaatcactttccatggaatctcacatttcccaataagttgtgaccccca 39566175  T
Q  205 tatcttcctttg 216  Q
     |||||||||||    
T  39566176 catcttcctttg 39566187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 39575279 - 39575064
Alignment:
Q  1 cctcttattttgcttctccatctcaacaactgaagctactcttattttaatctccacttccacttctggtgtactgaacataccctctttgcactcactt 100  Q
    ||||||||||||||||||||||||  |||| ||||||||| |||||||||||||||||||||| |  || ||  |||| |||||||||||||| ||||||    
T  39575279 cctcttattttgcttctccatctccgcaaccgaagctacttttattttaatctccacttccacctacggcgttatgaatataccctctttgcaatcactt 39575180  T
Q  101 ccactcaccaaatccattttcaaccannnnnnnaactccatgttttgtgtttcaagaatcaccttccatggaatgtcacctttgccaataagttgtgacc 200  Q
    ||||||| ||||||||| ||||||||       |||||||||||||||| |||||||||||| ||||||||||| |||||||| ||||||||||||||||    
T  39575179 ccactcaacaaatccatcttcaaccatttttttaactccatgttttgtgattcaagaatcactttccatggaatctcaccttttccaataagttgtgacc 39575080  T
Q  201 cccatatcttcctttg 216  Q
    |||| |||||||||||    
T  39575079 cccacatcttcctttg 39575064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 2 - 216
Target Start/End: Original strand, 39561264 - 39561478
Alignment:
Q  2 ctcttattttgcttctccatctcaacaactgaagctactcttattttaatctccacttccacttctggtgtactgaacataccctctttgcactcacttc 101  Q
    |||||||| | ||| ||||||||| |||| ||||  |||||||||||||| ||||||||||||||||||||   ||||||| |||||||||| |||||||    
T  39561264 ctcttattcttcttttccatctcagcaaccgaagtcactcttattttaatttccacttccacttctggtgttgggaacatagcctctttgcaatcacttc 39561363  T
Q  102 cactcaccaaatccattttcaaccannnnnnnaactccatgttttgtgtttcaagaatcaccttccatggaatgtcacctttgccaataagttgtgaccc 201  Q
    ||||||| ||||  || ||||||||       |||||||||||||||| |||||||||||| ||||||||||| |||||||| |||||||||||||||||    
T  39561364 cactcactaaatatatcttcaaccatttttttaactccatgttttgtgattcaagaatcactttccatggaatctcaccttttccaataagttgtgaccc 39561463  T
Q  202 ccatatcttcctttg 216  Q
    |||||||||||||||    
T  39561464 ccatatcttcctttg 39561478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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