View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2604_low_6 (Length: 572)
Name: NF2604_low_6
Description: NF2604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2604_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 539; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 1 - 555
Target Start/End: Original strand, 51112411 - 51112965
Alignment:
| Q |
1 |
gcctgcatactctttggtcttctctgtagcatcacctgcatactctttggtcttttgtgcagcatcacctgcatactctttggacttgtgcgctgcacca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51112411 |
gcctgcatactctttggtcttctctgtagcatcacctgcatactctttggttttttgtgcagcatcacctgcatactctttggacttgtgcgctgcacca |
51112510 |
T |
|
| Q |
101 |
gtggcatattctttggctttctgtgcagccttctgagcagcattagtagcatattctttggccttctgtgcagcactacctgtgtattctccagccttat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51112511 |
gtggcatattctttggctttctgtgcagccttctgagcagcatcagtagcatattctttggccttctgtgcagcactacctgtgtattctccagccttat |
51112610 |
T |
|
| Q |
201 |
gaatagcttcaccggcaaagtctctgttgtcctctgcatcatcatcatcatctgcatagctttcgtcagcagcataatgtttggtcttttcagaagcatc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
51112611 |
gaatagcttcaccggcaaagtctctgttgtcctctgcatcatcatcatcatctgcatagctttcgtcagcagcataatgtttggtcttctcagaagcatc |
51112710 |
T |
|
| Q |
301 |
agtggcataatctctgattttcttagaagcatcccaagcatagcctttggttttctcagcagcatcatgggcatggtcactggctttttgagcagtttcc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51112711 |
agtggcataatctctgattttcttagaagcatcccaagcatagcctttggttttctcagcagcatcatgggcatggtcactggctttttgagcagtttcc |
51112810 |
T |
|
| Q |
401 |
ttggacttgtgtgcagtttcatctgcatagtgtttggttttgtgtgcagcgtctgaagcatattcagaggctttatcagtggtggtgctgtccttatctt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51112811 |
ttggacttgtgtgcagtttcatctgcatagtgtttggttttgtgtgcagcgtctgaagcatattcagaggctttatcagtggtggtgctgtccttatctt |
51112910 |
T |
|
| Q |
501 |
tgtctttgaagccatggccttcggtgattttctctttggcccactcagtccatgt |
555 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51112911 |
tgtctttgaagccaaggccttcggtgattttctctttggcccactcagtccatgt |
51112965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 5 - 83
Target Start/End: Original strand, 51112382 - 51112460
Alignment:
| Q |
5 |
gcatactctttggtcttctctgtagcatcacctgcatactctttggtcttttgtgcagcatcacctgcatactctttgg |
83 |
Q |
| |
|
||||| |||||||| |||| || |||||| |||||||||||||||||||| | || ||||||||||||||||||||||| |
|
|
| T |
51112382 |
gcatagtctttggttttctgtgcagcatcgcctgcatactctttggtcttctctgtagcatcacctgcatactctttgg |
51112460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 51112348 - 51112427
Alignment:
| Q |
4 |
tgcatactctttggtcttctctgtagcatcacctgcatactctttggtcttttgtgcagcatcacctgcatactctttgg |
83 |
Q |
| |
|
||||||||||||| |||||| |||||| |||| ||||| |||||||| || ||||||||||| |||||||||||||||| |
|
|
| T |
51112348 |
tgcatactctttgctcttctgagtagcaccaccagcatagtctttggttttctgtgcagcatcgcctgcatactctttgg |
51112427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 51112028 - 51112096
Alignment:
| Q |
44 |
tctttggtcttttgtgcagcatcacctgcatactctttggacttgtgcgctgcaccagtggcatattct |
112 |
Q |
| |
|
||||||||||| | |||||||||||||||||| ||||| ||||||| |||||| || ||||||||||| |
|
|
| T |
51112028 |
tctttggtcttctctgcagcatcacctgcatagtctttagacttgtatgctgcagcattggcatattct |
51112096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 51112230 - 51112278
Alignment:
| Q |
6 |
catactctttggtcttctctgtagcatcacctgcatactctttggtctt |
54 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
51112230 |
cataatctttggtcttctctgctgcatcacctgcataatctttggtctt |
51112278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 83
Target Start/End: Original strand, 51111958 - 51112013
Alignment:
| Q |
28 |
agcatcacctgcatactctttggtcttttgtgcagcatcacctgcatactctttgg |
83 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||| ||||| ||||| ||||||| |
|
|
| T |
51111958 |
agcatcacctgcataatctttggctttttgtgcagcttcaccagcatagtctttgg |
51112013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 115
Target Start/End: Original strand, 51112301 - 51112360
Alignment:
| Q |
56 |
tgtgcagcatcacctgcatactctttggacttgtgcgctgcaccagtggcatattctttg |
115 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||| |||||| |||| ||||| |||||| |
|
|
| T |
51112301 |
tgtgcagcatcaccagcatactctttagacttgtatgctgcatcagttgcatactctttg |
51112360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 51112210 - 51112280
Alignment:
| Q |
19 |
cttctctgtagcatcacctgcatactctttggtcttttgtgcagcatcacctgcatactctttggacttgt |
89 |
Q |
| |
|
||||| || |||||||| | |||| ||||||||||| | ||| |||||||||||||| ||||||| ||||| |
|
|
| T |
51112210 |
cttctgtgcagcatcacttccataatctttggtcttctctgctgcatcacctgcataatctttggtcttgt |
51112280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 51111874 - 51111939
Alignment:
| Q |
43 |
ctctttggtcttttgtgcagcatcacctgcatactctttggacttgtgcgctgcaccagtggcata |
108 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| ||||| || |||| |||||| || ||||||| |
|
|
| T |
51111874 |
ctctttggttttttgagcagcatcacctgcatagtctttagatttgtatgctgcatcattggcata |
51111939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 51112028 - 51112065
Alignment:
| Q |
11 |
tctttggtcttctctgtagcatcacctgcatactcttt |
48 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
51112028 |
tctttggtcttctctgcagcatcacctgcatagtcttt |
51112065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University