View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2604_low_61 (Length: 219)
Name: NF2604_low_61
Description: NF2604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2604_low_61 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 1726197 - 1726415
Alignment:
| Q |
1 |
ccacctatatatttggattcaacttactagtccaatattccactattgtaactagattagtgtacctttctcaatgagccccaaaattaagaaaacaaag |
100 |
Q |
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| T |
1726197 |
ccacctatatatttggattcaacttactagtccaatattccactattgtaactagattagtgtacctttctcaatgagccccaaaattaagaaaacaaag |
1726296 |
T |
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| Q |
101 |
ttttatatgttgtctgaaggacagatattttaaaatagatgacgtgatggtatctgatatgcatcctatattgatatatgtctgatacgtctcgataaat |
200 |
Q |
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| T |
1726297 |
ttttatatgttgtctgaaggccagatactttaaaatggatgacatgatggtatctgatatgtatcctatattgatatctgtctgatacatctcgataaat |
1726396 |
T |
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| Q |
201 |
atagagagagaatctgaag |
219 |
Q |
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| T |
1726397 |
atcgagagagtatccgaag |
1726415 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 197
Target Start/End: Complemental strand, 33738250 - 33738169
Alignment:
| Q |
115 |
tgaaggacagatattttaaaatagatgacgtgatggtatctgatatgcatcctatattgatatatgtctgatacgtctcgata |
197 |
Q |
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| T |
33738250 |
tgaagcacaaatactttaaaattgatgacgt-atcgtatctgatatgtatcctgcactgatatatgtctgataagtcccgata |
33738169 |
T |
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