View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2604_low_62 (Length: 217)
Name: NF2604_low_62
Description: NF2604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2604_low_62 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 51112049 - 51112252
Alignment:
| Q |
1 |
tcacctgcatagtctttagacttgtatgctgcagcattggcatattctcttgtcttttctgtagcatcacccgcataatctttggtcttgtgtgctgcat |
100 |
Q |
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| T |
51112049 |
tcacctgcatagtctttagacttgtatgctgcagcattggcatattctcttgtcttttctgtagcatcacccgcataatctttggtcttgtatgctgcat |
51112148 |
T |
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| Q |
101 |
ctttggtcttctcagcagcatcaccagcatagtctttagtcttgtatgctgcatctttggccttctgtgcagcatcacttccataatctttggtcttctc |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
51112149 |
ctttggtcttctcggcagcatcaccagcatagtctttagtcttgtatgctgcatcttttgccttctgtgcagcatcacttccataatctttggtcttctc |
51112248 |
T |
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| Q |
201 |
tgct |
204 |
Q |
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|||| |
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| T |
51112249 |
tgct |
51112252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 64 - 155
Target Start/End: Original strand, 51112253 - 51112344
Alignment:
| Q |
64 |
gcatcacccgcataatctttggtcttgtgtgctgcatctttggtcttctcagcagcatcaccagcatagtctttagtcttgtatgctgcatc |
155 |
Q |
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|||||||| ||||||||||||||||||| |||||||||||||| | ||| ||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
51112253 |
gcatcacctgcataatctttggtcttgtatgctgcatctttggccatctgtgcagcatcaccagcatactctttagacttgtatgctgcatc |
51112344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 67 - 153
Target Start/End: Original strand, 51111995 - 51112081
Alignment:
| Q |
67 |
tcacccgcataatctttggtcttgtgtgctgcatctttggtcttctcagcagcatcaccagcatagtctttagtcttgtatgctgca |
153 |
Q |
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| T |
51111995 |
tcaccagcatagtctttggtcttatatgctgcatctttggtcttctctgcagcatcacctgcatagtctttagacttgtatgctgca |
51112081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 99 - 178
Target Start/End: Original strand, 51112234 - 51112313
Alignment:
| Q |
99 |
atctttggtcttctcagcagcatcaccagcatagtctttagtcttgtatgctgcatctttggccttctgtgcagcatcac |
178 |
Q |
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||||||||||||||| || |||||||| ||||| ||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
51112234 |
atctttggtcttctctgctgcatcacctgcataatctttggtcttgtatgctgcatctttggccatctgtgcagcatcac |
51112313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 51111896 - 51111980
Alignment:
| Q |
1 |
tcacctgcatagtctttagacttgtatgctgcagcattggcatattctcttgtcttttctgtagcatcacccgcataatctttgg |
85 |
Q |
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| T |
51111896 |
tcacctgcatagtctttagatttgtatgctgcatcattggcatactctctagtattgtgagcagcatcacctgcataatctttgg |
51111980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 115 - 191
Target Start/End: Original strand, 51111989 - 51112065
Alignment:
| Q |
115 |
gcagcatcaccagcatagtctttagtcttgtatgctgcatctttggccttctgtgcagcatcacttccataatcttt |
191 |
Q |
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||||| ||||||||||||||||| ||||| |||||||||||||||| ||||| ||||||||||| | |||| ||||| |
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| T |
51111989 |
gcagcttcaccagcatagtctttggtcttatatgctgcatctttggtcttctctgcagcatcacctgcatagtcttt |
51112065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 161
Target Start/End: Original strand, 51111875 - 51111936
Alignment:
| Q |
100 |
tctttggtcttctcagcagcatcaccagcatagtctttagtcttgtatgctgcatctttggc |
161 |
Q |
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|||||||| || | |||||||||||| ||||||||||||| |||||||||||||| ||||| |
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| T |
51111875 |
tctttggttttttgagcagcatcacctgcatagtctttagatttgtatgctgcatcattggc |
51111936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 155
Target Start/End: Original strand, 51112165 - 51112257
Alignment:
| Q |
63 |
agcatcacccgcataatctttggtcttgtgtgctgcatctttggtcttctcagcagcatcaccagcatagtctttagtcttgtatgctgcatc |
155 |
Q |
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||||||||| ||||| ||||| ||||||| |||||||||||| | ||||| |||||||||| |||| ||||| ||||| | ||||||||| |
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| T |
51112165 |
agcatcaccagcatagtctttagtcttgtatgctgcatcttttgccttctgtgcagcatcacttccataatctttggtcttctctgctgcatc |
51112257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 51112310 - 51112410
Alignment:
| Q |
1 |
tcacctgcatagtctttagacttgtatgctgcagcattggcatattctcttgtcttttctgtagcatcacccgcataatctttggtcttgtgtgctgcat |
100 |
Q |
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||||| ||||| ||||||||||||||||||||| || | ||||| ||| | |||| | |||||| |||| ||||| |||||||| || ||||| |||| |
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| T |
51112310 |
tcaccagcatactctttagacttgtatgctgcatcagttgcatactctttgctcttctgagtagcaccaccagcatagtctttggttttctgtgcagcat |
51112409 |
T |
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| Q |
101 |
c |
101 |
Q |
| |
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| |
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| T |
51112410 |
c |
51112410 |
T |
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