View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2604_low_65 (Length: 203)
Name: NF2604_low_65
Description: NF2604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2604_low_65 |
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Alignment Details
Target: chr5 (Bit Score: 132; Significance: 9e-69; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 15 - 187
Target Start/End: Original strand, 43255455 - 43255627
Alignment:
| Q |
15 |
attattctagttcttgtaaatgtcatttcttacaaggccatatcatgaaacatgctcacaggatgccaagacaagaaagtgaagaaaaggtggttgagnn |
114 |
Q |
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| T |
43255455 |
attattctagttcttgtaaatgtcatttcttacaaggccacatcatgaaacatgctcacaggatgctaagacaagaaagtgaagaaaaggtggttgagtt |
43255554 |
T |
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| Q |
115 |
nnnnnggtaataattataacttacagcaaccaacaagagcaaagaaaagaaaagagcatatatataatacatt |
187 |
Q |
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| T |
43255555 |
tttttggtaataattataacttacaacaaccaacaagagcaaagaaaataaaggagcatatatataatacatt |
43255627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 43258725 - 43258893
Alignment:
| Q |
19 |
ttctagttcttgtaaatgtcatttcttacaaggccatatcatgaaacatgctcacaggatgccaagacaagaaagtgaagaaaaggtggttgagnnnnnn |
118 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
43258725 |
ttctagttcttgtaaatgtcatttcttacaaggccacatcatgaaacatgctcacaagatgctaagacaagaaagtgaagaaaaggtggttgagtttttt |
43258824 |
T |
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| Q |
119 |
nggtaataattataacttacagcaaccaacaagagcaaagaaaagaaaagagcatatatataatacatt |
187 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
43258825 |
tggtaataattataacttacaacaaccaacaagagcaaagaaaataaaggagcatatatataatacatt |
43258893 |
T |
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