View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2605_high_10 (Length: 574)

Name: NF2605_high_10
Description: NF2605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2605_high_10
NF2605_high_10
[»] chr5 (7 HSPs)
chr5 (1-393)||(28203556-28203950)
chr5 (413-544)||(16104941-16105072)
chr5 (413-544)||(11583326-11583457)
chr5 (480-544)||(109680-109745)
chr5 (488-544)||(20313987-20314043)
chr5 (497-544)||(33150147-33150194)
chr5 (413-446)||(109777-109810)
[»] chr3 (11 HSPs)
chr3 (413-544)||(7853259-7853390)
chr3 (413-544)||(33341289-33341421)
chr3 (410-544)||(54652392-54652526)
chr3 (416-544)||(47785565-47785693)
chr3 (480-544)||(19946040-19946105)
chr3 (448-530)||(37917222-37917304)
chr3 (444-530)||(15549739-15549825)
chr3 (449-530)||(25104839-25104920)
chr3 (497-530)||(4813228-4813261)
chr3 (413-446)||(19945975-19946008)
chr3 (410-446)||(9591529-9591565)
[»] scaffold0150 (2 HSPs)
scaffold0150 (413-544)||(21056-21187)
scaffold0150 (413-544)||(27885-28016)
[»] chr4 (5 HSPs)
chr4 (413-544)||(16522127-16522258)
chr4 (413-544)||(7186586-7186717)
chr4 (438-536)||(17376297-17376395)
chr4 (480-544)||(9295039-9295103)
chr4 (488-530)||(12134497-12134539)
[»] chr6 (5 HSPs)
chr6 (413-544)||(18824234-18824365)
chr6 (413-544)||(18840089-18840220)
chr6 (413-544)||(17084073-17084204)
chr6 (413-544)||(18582633-18582764)
chr6 (413-544)||(4990351-4990481)
[»] chr2 (5 HSPs)
chr2 (413-544)||(25212323-25212454)
chr2 (421-544)||(24827619-24827742)
chr2 (462-530)||(20272703-20272771)
chr2 (488-544)||(19434151-19434207)
chr2 (488-544)||(43642253-43642309)
[»] scaffold0120 (2 HSPs)
scaffold0120 (413-544)||(18676-18808)
scaffold0120 (413-544)||(30461-30593)
[»] chr7 (6 HSPs)
chr7 (413-544)||(7284895-7285026)
chr7 (497-544)||(14275533-14275580)
chr7 (497-530)||(15978693-15978726)
chr7 (481-536)||(3192925-3192980)
chr7 (438-525)||(44305973-44306060)
chr7 (438-526)||(28719783-28719871)
[»] scaffold0310 (1 HSPs)
scaffold0310 (413-544)||(954-1085)
[»] scaffold0028 (2 HSPs)
scaffold0028 (480-544)||(129900-129964)
scaffold0028 (413-446)||(129835-129868)
[»] scaffold0317 (1 HSPs)
scaffold0317 (438-530)||(13414-13506)
[»] scaffold0183 (1 HSPs)
scaffold0183 (488-544)||(10350-10406)
[»] scaffold0833 (1 HSPs)
scaffold0833 (480-541)||(2642-2703)
[»] scaffold0231 (1 HSPs)
scaffold0231 (488-541)||(13543-13596)
[»] scaffold0013 (1 HSPs)
scaffold0013 (449-530)||(7984-8065)
[»] scaffold0468 (1 HSPs)
scaffold0468 (438-530)||(11855-11947)
[»] chr8 (4 HSPs)
chr8 (497-544)||(24107195-24107243)
chr8 (438-525)||(20176734-20176821)
chr8 (438-525)||(20221461-20221548)
chr8 (497-544)||(34012805-34012852)
[»] scaffold0090 (1 HSPs)
scaffold0090 (481-544)||(3950-4013)
[»] scaffold0158 (1 HSPs)
scaffold0158 (480-544)||(24479-24543)
[»] scaffold0017 (1 HSPs)
scaffold0017 (488-544)||(12115-12171)
[»] scaffold0032 (1 HSPs)
scaffold0032 (497-530)||(117043-117076)


Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 28203556 - 28203950
Alignment:
Q  1 actacttttaaaaaataccctatgataaccgacattttaatttgcaaaggnnnnnnng---ttaaaaatacgtttagcaaaataattattttgagtgtaa 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||           | |||||||||||||||||||||||||||||||||||||    
T  28203556 actacttttaaaaaataccctatgataaccgacattttaatttgcaaaggaagaaaaaaaatgaaaaatacgtttagcaaaataattattttgagtgtaa 28203655  T
Q  98 atcatgacannnnnnnnnnnnnnnnnnaaaatgattaaactacctttcgaacgatttaaaaaattgaggcgggggtaattagagtgattgaaattattgt 197  Q
    |||||||||                  |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||    
T  28203656 atcatgacattttattttattttttt-aaaatgattaaactacctttcgaacgatttaaaaaattgagg-gagggtaattagagtgattgaaattagtgt 28203753  T
Q  198 tttttcatgcttttgtttgggtaattcgaataaggatgnnnnnnnnnaaagatcgaatcaggatgttgaaactgcgtcctggattattctggcacacgta 297  Q
    ||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28203754 tttttcatgcttttgtttgggtaattcgaataaggatgttttttttagaagatcgaatcaggatgttgaaactgcgtcctggattattctgtcacacgta 28203853  T
Q  298 attcaaattgccctgatgatttggaagaatca-ccaaaaaggaaatttaaggctaagtgttgagagttttggggtgaaattctatggttgataatgt 393  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  28203854 attcaaattgccctgatgatttggaagaatcacccaaaaaggaaatttaaggctaagtgttaagagttttggggtgaaattctatggttgataatgt 28203950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 413 - 544
Target Start/End: Original strand, 16104941 - 16105072
Alignment:
Q  413 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttc 512  Q
    |||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||  ||||||| |||||||  ||||||||| ||||||    
T  16104941 tatttagttcacaaaagttcatttcgacaaaatcatcaaaattaccaaattacgacaagttcatatcatttcttccatattgcaaaaccaattcattttc 16105040  T
Q  513 aaaacaaaaccaagttaggatcaagctatgat 544  Q
    |||||||||||||||||| |||||||| ||||    
T  16105041 aaaacaaaaccaagttagaatcaagctttgat 16105072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 413 - 544
Target Start/End: Original strand, 11583326 - 11583457
Alignment:
Q  413 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttc 512  Q
    |||||||||||||||||||||||| |||| || |||||||||||| || ||||||||||||||||  ||||||| |||||||  |||||||||  |||||    
T  11583326 tatttagttcacaaaagttcatttcgacaaaaacatcaaaattaccaagttacgacaagttcatatcatttcttccatattgcaaaaccaattccttttc 11583425  T
Q  513 aaaacaaaaccaagttaggatcaagctatgat 544  Q
    |||||||||| ||||||| |||||||||||||    
T  11583426 aaaacaaaacaaagttagaatcaagctatgat 11583457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 480 - 544
Target Start/End: Complemental strand, 109745 - 109680
Alignment:
Q  480 atttctttcatattgtcaaaccaatttattttcaaaacaaaa-ccaagttaggatcaagctatgat 544  Q
    ||||||| |||||||  ||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  109745 atttcttccatattgcaaaaccaattcattttcaaaacaaaaaccaagttaggatcaagctatgat 109680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 488 - 544
Target Start/End: Original strand, 20313987 - 20314043
Alignment:
Q  488 catattgtcaaaccaatttattttcaaaacaaaaccaagttaggatcaagctatgat 544  Q
    |||||||  |||| |||| |||||||||||||||||||||||| |||||||||||||    
T  20313987 catattgcaaaactaattcattttcaaaacaaaaccaagttagaatcaagctatgat 20314043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 497 - 544
Target Start/End: Complemental strand, 33150194 - 33150147
Alignment:
Q  497 aaaccaatttattttcaaaacaaaaccaagttaggatcaagctatgat 544  Q
    ||||||| | |||||||||||||||||||||||| |||||| ||||||    
T  33150194 aaaccaactcattttcaaaacaaaaccaagttagaatcaagttatgat 33150147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 446
Target Start/End: Complemental strand, 109810 - 109777
Alignment:
Q  413 tatttagttcacaaaagttcattttgacataatc 446  Q
    ||||||||||||||||||||||||||||| ||||    
T  109810 tatttagttcacaaaagttcattttgacaaaatc 109777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 8e-47; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 413 - 544
Target Start/End: Original strand, 7853259 - 7853390
Alignment:
Q  413 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttc 512  Q
    |||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||  ||||||| |||||||  ||||||||||||||||    
T  7853259 tatttagttcacaaaagttcatttcgacaaaatcatcaaaattaccaaattacgacaagttcatatcatttcttccatattgcaaaaccaatttattttc 7853358  T
Q  513 aaaacaaaaccaagttaggatcaagctatgat 544  Q
    |||||||||| |||||||||||||||||||||    
T  7853359 aaaacaaaactaagttaggatcaagctatgat 7853390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 413 - 544
Target Start/End: Original strand, 33341289 - 33341421
Alignment:
Q  413 tatttagttcacaaaagttcattttgacataa-tcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttatttt 511  Q
    ||||||||||||||||||||||||||||| || ||||||||||||  |||||||||||||||||||  ||||||| |||||||  ||||||| | |||||    
T  33341289 tatttagttcacaaaagttcattttgacaaaaatcatcaaaattatcaaattacgacaagttcatatcatttcttccatattgcgaaaccaaatcatttt 33341388  T
Q  512 caaaacaaaaccaagttaggatcaagctatgat 544  Q
    ||||||||||||||||||| |||||||||||||    
T  33341389 caaaacaaaaccaagttagaatcaagctatgat 33341421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 410 - 544
Target Start/End: Complemental strand, 54652526 - 54652392
Alignment:
Q  410 tcttatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttatt 509  Q
    ||||||||||||||||||||||| ||| |||| ||||||||||||||| || |||||||||| |||||  |||| || |||||||  ||| ||||| |||    
T  54652526 tcttatttagttcacaaaagttcgtttcgacaaaatcatcaaaattaccaagttacgacaagatcatatcatttgttccatattgcgaaatcaattcatt 54652427  T
Q  510 ttcaaaacaaaaccaagttaggatcaagctatgat 544  Q
    ||||||||||||| |||||||||||||||||||||    
T  54652426 ttcaaaacaaaacaaagttaggatcaagctatgat 54652392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 416 - 544
Target Start/End: Complemental strand, 47785693 - 47785565
Alignment:
Q  416 ttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttcaaa 515  Q
    ||||||||||||| ||||||| |||| ||||||||||||||| || ||||| ||||||||||  |||| || |||||||  ||| ||||| |||||||||    
T  47785693 ttagttcacaaaatttcatttcgacaaaatcatcaaaattaccaagttacggcaagttcatatcatttattccatattgcaaaatcaattcattttcaaa 47785594  T
Q  516 acaaaaccaagttaggatcaagctatgat 544  Q
    ||||||| |||||||||||||||||||||    
T  47785593 acaaaacaaagttaggatcaagctatgat 47785565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 480 - 544
Target Start/End: Original strand, 19946040 - 19946105
Alignment:
Q  480 atttctttcatattgtcaaaccaatttattttcaaaacaaaa-ccaagttaggatcaagctatgat 544  Q
    ||||||| |||||||  ||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  19946040 atttcttccatattgcaaaaccaattcattttcaaaacaaaaaccaagttaggatcaagctatgat 19946105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 448 - 530
Target Start/End: Complemental strand, 37917304 - 37917222
Alignment:
Q  448 tcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttcaaaacaaaaccaagttag 530  Q
    ||||||| || || ||||||||||||| ||  ||||||| |||||||  ||||||||| || |||||||||||||||||||||    
T  37917304 tcaaaatcacaaagttacgacaagttcgtatcatttcttccatattgcaaaaccaattcatgttcaaaacaaaaccaagttag 37917222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 444 - 530
Target Start/End: Original strand, 15549739 - 15549825
Alignment:
Q  444 atcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttcaaaacaaaaccaagttag 530  Q
    |||||||||||  | || ||||||||||||| ||   |||||| ||||||   ||||||||| ||||||||||||||||||||||||    
T  15549739 atcatcaaaatctccaagttacgacaagttcgtatcgtttcttccatattacaaaaccaattcattttcaaaacaaaaccaagttag 15549825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 449 - 530
Target Start/End: Complemental strand, 25104920 - 25104839
Alignment:
Q  449 caaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttcaaaacaaaaccaagttag 530  Q
    |||||| || || ||||||||||||| ||  ||| ||| |||||||  ||||||||| |||||| |||||||||||||||||    
T  25104920 caaaatcacaaagttacgacaagttcgtatcattccttccatattgcaaaaccaattcattttccaaacaaaaccaagttag 25104839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 497 - 530
Target Start/End: Original strand, 4813228 - 4813261
Alignment:
Q  497 aaaccaatttattttcaaaacaaaaccaagttag 530  Q
    ||||||||| ||||||||||||||||||||||||    
T  4813228 aaaccaattcattttcaaaacaaaaccaagttag 4813261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 446
Target Start/End: Original strand, 19945975 - 19946008
Alignment:
Q  413 tatttagttcacaaaagttcattttgacataatc 446  Q
    ||||||||||||||||||||||||||||| ||||    
T  19945975 tatttagttcacaaaagttcattttgacaaaatc 19946008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 410 - 446
Target Start/End: Complemental strand, 9591565 - 9591529
Alignment:
Q  410 tcttatttagttcacaaaagttcattttgacataatc 446  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  9591565 tcttagttagttcacaaaagttcattttgacaaaatc 9591529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 88; Significance: 5e-42; HSPs: 2)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 413 - 544
Target Start/End: Original strand, 21056 - 21187
Alignment:
Q  413 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttc 512  Q
    |||||||||||||||||||||||| |||| |||||| |||||||| || ||||||||||||||||  ||||||| |||||||  ||||||||| ||||||    
T  21056 tatttagttcacaaaagttcatttcgacaaaatcataaaaattaccaagttacgacaagttcatatcatttcttccatattgcaaaaccaattcattttc 21155  T
Q  513 aaaacaaaaccaagttaggatcaagctatgat 544  Q
    ||||||||||||||||||||||||||||||||    
T  21156 aaaacaaaaccaagttaggatcaagctatgat 21187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 413 - 544
Target Start/End: Original strand, 27885 - 28016
Alignment:
Q  413 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttc 512  Q
    |||||||||||||||||||||||| |||| |||||| |||||||| || ||||||||||||||||  ||||||| |||||||  ||||||||| ||||||    
T  27885 tatttagttcacaaaagttcatttcgacaaaatcataaaaattaccaagttacgacaagttcatatcatttcttccatattgcaaaaccaattcattttc 27984  T
Q  513 aaaacaaaaccaagttaggatcaagctatgat 544  Q
    ||||||||||||||||||||||||||||||||    
T  27985 aaaacaaaaccaagttaggatcaagctatgat 28016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 5e-42; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 413 - 544
Target Start/End: Original strand, 16522127 - 16522258
Alignment:
Q  413 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttc 512  Q
    |||||||||||||||||||||||| |||| ||||||||||||||| |||||||| ||||||||||  ||||||| |||||||  ||||||||| ||||||    
T  16522127 tatttagttcacaaaagttcatttggacaaaatcatcaaaattaccaaattacggcaagttcatatcatttcttccatattgcaaaaccaattcattttc 16522226  T
Q  513 aaaacaaaaccaagttaggatcaagctatgat 544  Q
    |||||||||||||||||| |||||||||||||    
T  16522227 aaaacaaaaccaagttagaatcaagctatgat 16522258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 413 - 544
Target Start/End: Complemental strand, 7186717 - 7186586
Alignment:
Q  413 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttc 512  Q
    ||||||||| |||||||||||||| |||| ||||| ||||||||| || ||||||||||||||||  ||||||| |||||||  ||||||||| ||||||    
T  7186717 tatttagtttacaaaagttcatttcgacaaaatcaacaaaattaccaagttacgacaagttcatatcatttcttccatattgcaaaaccaattcattttc 7186618  T
Q  513 aaaacaaaaccaagttaggatcaagctatgat 544  Q
    |||||||||||| |||||||| ||||||||||    
T  7186617 aaaacaaaaccatgttaggataaagctatgat 7186586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 438 - 536
Target Start/End: Complemental strand, 17376395 - 17376297
Alignment:
Q  438 gacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttcaaaacaaaaccaagttaggatcaa 536  Q
    |||| |||||||||||| || || ||||||||||||| ||  ||||||| |||||||  ||||||||| ||||||||||||||| |||||||| |||||    
T  17376395 gacaaaatcatcaaaatcacaaagttacgacaagttcgtatcatttcttccatattgcaaaaccaattcattttcaaaacaaaatcaagttagaatcaa 17376297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 480 - 544
Target Start/End: Original strand, 9295039 - 9295103
Alignment:
Q  480 atttctttcatattgtcaaaccaatttattttcaaaacaaaaccaagttaggatcaagctatgat 544  Q
    ||||||| ||| |||  ||||||||| |||||||||||||||||||||||| |||||||||||||    
T  9295039 atttcttccatgttgcaaaaccaattcattttcaaaacaaaaccaagttagaatcaagctatgat 9295103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 488 - 530
Target Start/End: Complemental strand, 12134539 - 12134497
Alignment:
Q  488 catattgtcaaaccaatttattttcaaaacaaaaccaagttag 530  Q
    |||||||  ||||||||| ||||||||||||||||||||||||    
T  12134539 catattgcaaaaccaattcattttcaaaacaaaaccaagttag 12134497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 1e-39; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 413 - 544
Target Start/End: Complemental strand, 18824365 - 18824234
Alignment:
Q  413 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttc 512  Q
    |||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||  ||||||| |||||||  |||| |||| ||| ||    
T  18824365 tatttagttcacaaaagttcatttcgacaaaatcatcaaaattaccaaattacgacaagttcatatcatttcttccatattgcaaaacgaattcattatc 18824266  T
Q  513 aaaacaaaaccaagttaggatcaagctatgat 544  Q
    |||||||||||||||||| |||||||||||||    
T  18824265 aaaacaaaaccaagttagaatcaagctatgat 18824234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 413 - 544
Target Start/End: Complemental strand, 18840220 - 18840089
Alignment:
Q  413 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttc 512  Q
    |||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||  ||||||| |||||||  |||| |||| ||| ||    
T  18840220 tatttagttcacaaaagttcatttcgacaaaatcatcaaaattaccaaattacgacaagttcatatcatttcttccatattgcaaaacgaattcattatc 18840121  T
Q  513 aaaacaaaaccaagttaggatcaagctatgat 544  Q
    |||||||||||||||||| |||||||||||||    
T  18840120 aaaacaaaaccaagttagaatcaagctatgat 18840089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 413 - 544
Target Start/End: Complemental strand, 17084204 - 17084073
Alignment:
Q  413 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttc 512  Q
    |||||| ||||||||||||||||| |||| ||| |||||||||||  | ||| ||||||||||||  ||||||| |||||||  ||||||||| ||||||    
T  17084204 tatttaattcacaaaagttcatttcgacaaaattatcaaaattaccgagttatgacaagttcatatcatttcttccatattgcaaaaccaattcattttc 17084105  T
Q  513 aaaacaaaaccaagttaggatcaagctatgat 544  Q
    |||||||||||||||||| |||||||||||||    
T  17084104 aaaacaaaaccaagttagaatcaagctatgat 17084073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 413 - 544
Target Start/End: Original strand, 18582633 - 18582764
Alignment:
Q  413 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttc 512  Q
    |||||||||||||||||||||||| |||| ||||||||||||||| || ||||||||||||||||  ||||||| |||||||  ||| ||||| ||||||    
T  18582633 tatttagttcacaaaagttcatttcgacaaaatcatcaaaattaccaagttacgacaagttcatatcatttcttccatattgcgaaatcaattcattttc 18582732  T
Q  513 aaaacaaaaccaagttaggatcaagctatgat 544  Q
    ||||||||||||||| |  |||||| ||||||    
T  18582733 aaaacaaaaccaagtgaaaatcaagttatgat 18582764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 413 - 544
Target Start/End: Original strand, 4990351 - 4990481
Alignment:
Q  413 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttc-atactatttctttcatattgtcaaaccaatttatttt 511  Q
    ||||||||||||||||||||||||||||| ||||   | | || ||||| | |  ||||||| |||  ||||||| ||||||   ||||||||| |||||    
T  4990351 tatttagttcacaaaagttcattttgacaaaatccg-acatttcctaaaattc--caagttccatatcatttcttccatatttcaaaaccaattcatttt 4990447  T
Q  512 caaaacaaaa-ccaagttaggatcaagctatgat 544  Q
    |||||||||| |||||||||||||||||||||||    
T  4990448 caaaacaaaaaccaagttaggatcaagctatgat 4990481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 413 - 544
Target Start/End: Original strand, 25212323 - 25212454
Alignment:
Q  413 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttc 512  Q
    ||||| |||||||||||||| ||| |||| ||||||||||||||| |||||||||||||||||||  ||||||| |||||||  ||||||||| ||||||    
T  25212323 tatttggttcacaaaagttcgtttcgacaaaatcatcaaaattaccaaattacgacaagttcatatcatttcttccatattgcaaaaccaattcattttc 25212422  T
Q  513 aaaacaaaaccaagttaggatcaagctatgat 544  Q
    |||||||||| |||||||||||||||||||||    
T  25212423 aaaacaaaactaagttaggatcaagctatgat 25212454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 421 - 544
Target Start/End: Complemental strand, 24827742 - 24827619
Alignment:
Q  421 tcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttcaaaacaaa 520  Q
    |||||||||||||||| |||| |||||||||||||||  ||||||||||||||||||  ||||||| |||||||  ||||||||| ||||||||||||||    
T  24827742 tcacaaaagttcatttcgacaaaatcatcaaaattaccgaattacgacaagttcatatcatttcttccatattgcaaaaccaattcattttcaaaacaaa 24827643  T
Q  521 accaagttaggatcaagctatgat 544  Q
    |||||||||| |||||||||||||    
T  24827642 accaagttagaatcaagctatgat 24827619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 462 - 530
Target Start/End: Original strand, 20272703 - 20272771
Alignment:
Q  462 ttacgacaagttcatactatttctttcatattgtcaaaccaatttattttcaaaacaaaaccaagttag 530  Q
    ||||||||||||| ||  ||| ||| |||||||  ||||||||| ||||||||||||||||||||||||    
T  20272703 ttacgacaagttcgtagcattccttccatattgcaaaaccaattcattttcaaaacaaaaccaagttag 20272771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 488 - 544
Target Start/End: Complemental strand, 19434207 - 19434151
Alignment:
Q  488 catattgtcaaaccaatttattttcaaaacaaaaccaagttaggatcaagctatgat 544  Q
    |||||||  ||||||| | |||||||||||||||||| ||||| |||||||||||||    
T  19434207 catattgcaaaaccaaatcattttcaaaacaaaaccatgttagaatcaagctatgat 19434151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 488 - 544
Target Start/End: Original strand, 43642253 - 43642309
Alignment:
Q  488 catattgtcaaaccaatttattttcaaaacaaaaccaagttaggatcaagctatgat 544  Q
    |||||||  |||||||||  ||||||||||||||||| ||||| ||||| |||||||    
T  43642253 catattgcaaaaccaattcgttttcaaaacaaaaccacgttagaatcaaactatgat 43642309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 413 - 544
Target Start/End: Original strand, 18676 - 18808
Alignment:
Q  413 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttat-ttt 511  Q
    |||||||||||||||||||||||| |||| |||||||| |||||| |||||||||||||||||||  ||||||| ||||||   |||||||||  | |||    
T  18676 tatttagttcacaaaagttcatttcgacaaaatcatcacaattaccaaattacgacaagttcatatcatttcttccatattacaaaaccaattcctattt 18775  T
Q  512 caaaacaaaaccaagttaggatcaagctatgat 544  Q
    |||||||||||||||||||||||||||||||||    
T  18776 caaaacaaaaccaagttaggatcaagctatgat 18808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 413 - 544
Target Start/End: Original strand, 30461 - 30593
Alignment:
Q  413 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttat-ttt 511  Q
    |||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||  ||| ||| ||||||   |||||||||  | |||    
T  30461 tatttagttcacaaaagttcatttcgacaaaatcatcaaaattaccaaattacgacaagttcatatcattacttccatattacaaaaccaattcctattt 30560  T
Q  512 caaaacaaaaccaagttaggatcaagctatgat 544  Q
    | |||||||||||||||||||||||||||||||    
T  30561 ctaaacaaaaccaagttaggatcaagctatgat 30593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 413 - 544
Target Start/End: Complemental strand, 7285026 - 7284895
Alignment:
Q  413 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttc 512  Q
    |||||||||||||||| ||||||| |||| |||| |||||||||| || ||||||||||||||||  ||||||| | ||||| |||||| ||| ||||||    
T  7285026 tatttagttcacaaaatttcatttcgacaaaatcgtcaaaattaccaagttacgacaagttcatatcatttcttccgtattgccaaaccgattcattttc 7284927  T
Q  513 aaaacaaaaccaagttaggatcaagctatgat 544  Q
    |||||||||||||||||| ||||| |||||||    
T  7284926 aaaacaaaaccaagttagaatcaatctatgat 7284895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 497 - 544
Target Start/End: Complemental strand, 14275580 - 14275533
Alignment:
Q  497 aaaccaatttattttcaaaacaaaaccaagttaggatcaagctatgat 544  Q
    ||||||||| |||||||||||||||||| ||||| |||||||||||||    
T  14275580 aaaccaattcattttcaaaacaaaaccacgttagaatcaagctatgat 14275533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 497 - 530
Target Start/End: Complemental strand, 15978726 - 15978693
Alignment:
Q  497 aaaccaatttattttcaaaacaaaaccaagttag 530  Q
    ||||||||||||||||||||||||||||||||||    
T  15978726 aaaccaatttattttcaaaacaaaaccaagttag 15978693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 536
Target Start/End: Complemental strand, 3192980 - 3192925
Alignment:
Q  481 tttctttcatattgtcaaaccaatttattttcaaaacaaaaccaagttaggatcaa 536  Q
    |||||| |||||||  ||| ||||| |||||||||||||||||||||||| |||||    
T  3192980 tttcttccatattgcaaaatcaattcattttcaaaacaaaaccaagttagaatcaa 3192925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 438 - 525
Target Start/End: Complemental strand, 44306060 - 44305973
Alignment:
Q  438 gacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttcaaaacaaaaccaa 525  Q
    |||| |||||||||||| |  ||| ||| |||||||| || ||||| || |||| ||  ||||||||| |||||||||||||||||||    
T  44306060 gacaaaatcatcaaaatcataaaactacaacaagttcgtattatttattccataatgcaaaaccaattcattttcaaaacaaaaccaa 44305973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 438 - 526
Target Start/End: Original strand, 28719783 - 28719871
Alignment:
Q  438 gacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttcaaaacaaaaccaag 526  Q
    |||| |||||||||||| |  ||  |||||||||||| ||  | ||| | |||||||  ||||||||| ||||||||||||||||||||    
T  28719783 gacaaaatcatcaaaatcataaagctacgacaagttcgtatcacttcctccatattgcaaaaccaattcattttcaaaacaaaaccaag 28719871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 413 - 544
Target Start/End: Complemental strand, 1085 - 954
Alignment:
Q  413 tatttagttcacaaaagttcattttgacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttc 512  Q
    ||||||||| |||||||||||||| |||| ||||||||||||||| || ||||||||||||||||  ||||||| |||||||  ||| ||| | |||| |    
T  1085 tatttagtttacaaaagttcatttcgacaaaatcatcaaaattaccaagttacgacaagttcatatcatttcttccatattgcgaaatcaaatcatttcc 986  T
Q  513 aaaacaaaaccaagttaggatcaagctatgat 544  Q
    ||| |||||||||||||| |||||||||||||    
T  985 aaatcaaaaccaagttagaatcaagctatgat 954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 480 - 544
Target Start/End: Original strand, 129900 - 129964
Alignment:
Q  480 atttctttcatattgtcaaaccaatttattttcaaaacaaaaccaagttaggatcaagctatgat 544  Q
    ||||||| |||||||  ||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  129900 atttcttccatattgcaaaatcaattcattttcaaaacaaaaccaagttaggatcaagctatgat 129964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 446
Target Start/End: Original strand, 129835 - 129868
Alignment:
Q  413 tatttagttcacaaaagttcattttgacataatc 446  Q
    ||||||||||||||||||||||||||||| ||||    
T  129835 tatttagttcacaaaagttcattttgacaaaatc 129868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 438 - 530
Target Start/End: Complemental strand, 13506 - 13414
Alignment:
Q  438 gacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttcaaaacaaaaccaagttag 530  Q
    |||| |||||||||||| || || ||||||||| ||| ||  ||||||| |||||||  ||||||||| |||||||||||||||| |||||||    
T  13506 gacaaaatcatcaaaatcacaaagttacgacaatttcgtatcatttcttccatattgcaaaaccaattcattttcaaaacaaaacaaagttag 13414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 488 - 544
Target Start/End: Original strand, 10350 - 10406
Alignment:
Q  488 catattgtcaaaccaatttattttcaaaacaaaaccaagttaggatcaagctatgat 544  Q
    |||||||  ||||||||| |||||||||||||||||||||||| |||||||||||||    
T  10350 catattgcaaaaccaattcattttcaaaacaaaaccaagttagaatcaagctatgat 10406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0833 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0833
Description:

Target: scaffold0833; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 480 - 541
Target Start/End: Original strand, 2642 - 2703
Alignment:
Q  480 atttctttcatattgtcaaaccaatttattttcaaaacaaaaccaagttaggatcaagctat 541  Q
    ||||||| |||||||  ||||||||| ||||| |||||||||||||||||||||||| ||||    
T  2642 atttcttccatattgcaaaaccaattcatttttaaaacaaaaccaagttaggatcaacctat 2703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 488 - 541
Target Start/End: Complemental strand, 13596 - 13543
Alignment:
Q  488 catattgtcaaaccaatttattttcaaaacaaaaccaagttaggatcaagctat 541  Q
    |||||||  ||||||||| |||||||||||||||||||||||| ||||||||||    
T  13596 catattgcaaaaccaattcattttcaaaacaaaaccaagttagaatcaagctat 13543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 449 - 530
Target Start/End: Complemental strand, 8065 - 7984
Alignment:
Q  449 caaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttcaaaacaaaaccaagttag 530  Q
    |||||| || |||||||||||||||| ||  ||| ||| |||||||  ||||||||| |||||| |||||||||||||||||    
T  8065 caaaatcacaaaattacgacaagttcgtatcattccttccatattgcaaaaccaattcattttccaaacaaaaccaagttag 7984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 438 - 530
Target Start/End: Complemental strand, 11947 - 11855
Alignment:
Q  438 gacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttcaaaacaaaaccaagttag 530  Q
    |||| |||||||||||| || || ||| ||||||||| ||  ||||||| |||| ||  ||||||||| ||||||||||||||| ||||||||    
T  11947 gacaaaatcatcaaaatcacaaagttatgacaagttcgtatcatttcttccatagtgcaaaaccaattcattttcaaaacaaaaacaagttag 11855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 497 - 544
Target Start/End: Complemental strand, 24107243 - 24107195
Alignment:
Q  497 aaaccaatttattttcaaaacaaaa-ccaagttaggatcaagctatgat 544  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  24107243 aaaccaattcattttcaaaacaaaaaccaagttaggatcaagctatgat 24107195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 438 - 525
Target Start/End: Complemental strand, 20176821 - 20176734
Alignment:
Q  438 gacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttcaaaacaaaaccaa 525  Q
    |||| |||||||||||| |  ||| ||| |||||||| || ||||| || |||| ||  ||||||||| |||||||||||||||||||    
T  20176821 gacaaaatcatcaaaatcataaaactacaacaagttcgtattatttattccataatgcaaaaccaattcattttcaaaacaaaaccaa 20176734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 438 - 525
Target Start/End: Complemental strand, 20221548 - 20221461
Alignment:
Q  438 gacataatcatcaaaattactaaattacgacaagttcatactatttctttcatattgtcaaaccaatttattttcaaaacaaaaccaa 525  Q
    |||| |||||||||||| |  ||| ||| |||||||| || ||||| || |||| ||  ||||||||| |||||||||||||||||||    
T  20221548 gacaaaatcatcaaaatcataaaactacaacaagttcgtattatttattccataatgcaaaaccaattcattttcaaaacaaaaccaa 20221461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 497 - 544
Target Start/End: Complemental strand, 34012852 - 34012805
Alignment:
Q  497 aaaccaatttattttcaaaacaaaaccaagttaggatcaagctatgat 544  Q
    ||||||| | |||||||||||||||||||||||| |||||| ||||||    
T  34012852 aaaccaactcattttcaaaacaaaaccaagttagaatcaagttatgat 34012805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 481 - 544
Target Start/End: Complemental strand, 4013 - 3950
Alignment:
Q  481 tttctttcatattgtcaaaccaatttattttcaaaacaaaaccaagttaggatcaagctatgat 544  Q
    ||||| ||||||||  ||||||||| |||||||||||||||| | ||||| |||||||||||||    
T  4013 tttctctcatattgcaaaaccaattcattttcaaaacaaaactacgttagaatcaagctatgat 3950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 480 - 544
Target Start/End: Original strand, 24479 - 24543
Alignment:
Q  480 atttctttcatattgtcaaaccaatttattttcaaaacaaaaccaagttaggatcaagctatgat 544  Q
    ||||||| |||||||  ||||||||| ||||| |||| ||||| ||||||| |||||||||||||    
T  24479 atttcttccatattgcaaaaccaattcattttaaaaaaaaaacaaagttagaatcaagctatgat 24543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 488 - 544
Target Start/End: Original strand, 12115 - 12171
Alignment:
Q  488 catattgtcaaaccaatttattttcaaaacaaaaccaagttaggatcaagctatgat 544  Q
    |||||||  |||||| || |||||||||||||||||||||||| |||||| ||||||    
T  12115 catattgcaaaaccagttcattttcaaaacaaaaccaagttagaatcaagttatgat 12171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 497 - 530
Target Start/End: Complemental strand, 117076 - 117043
Alignment:
Q  497 aaaccaatttattttcaaaacaaaaccaagttag 530  Q
    ||||||||| ||||||||||||||||||||||||    
T  117076 aaaccaattcattttcaaaacaaaaccaagttag 117043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University