View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2605_high_15 (Length: 523)
Name: NF2605_high_15
Description: NF2605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2605_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 17 - 341
Target Start/End: Original strand, 5530012 - 5530348
Alignment:
| Q |
17 |
gtgaagctgaaagggaaagtctaggtcccactctaaaaattacaaccataatggagtgagtgtgggtaccattttacaatagtatttaacattttggtcc |
116 |
Q |
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| T |
5530012 |
gtgaagctgaaagggaaagtctaggtcccactctaaaaattacaaccataatggagtgagtgtgggtaccattttgcaatagtatttaacattttggtcc |
5530111 |
T |
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| Q |
117 |
ttcaaatgtgatcattatactcccaac-----------tctttttgcacaatggaaagtggactacctttgcttcattctctcttgcaacatactctaag |
205 |
Q |
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| T |
5530112 |
ttcaaatgtgatcattatactcccaaccctctccccactctttttgcacaatggaaagtggactacctttgcttcattctctcttgcaacatactctaag |
5530211 |
T |
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| Q |
206 |
aaacttatgctcatttcctacctcttcaacttcttccaaatgggtctatgctgttttctggagggtagtgccacgtatctttcctccaccaaggtaaaat |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5530212 |
aaacttatgctcatttcctacctcttcaacttcttccaaatgggtctatgctgttttctggagggtagtgccacgtatctttcctccaccaaggtaaaat |
5530311 |
T |
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| Q |
306 |
actaaatatt-aactaatgaacgtaaaatattcaagc |
341 |
Q |
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| T |
5530312 |
attaaatattaaactaatgaacgtaaaatattcaagc |
5530348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 361 - 523
Target Start/End: Original strand, 5530377 - 5530539
Alignment:
| Q |
361 |
atagtataggaaatttgactttatgttaatgtttatagactactaatgtactttgttttttaaggtgggaatttggagggacttctcttgatcgttccaa |
460 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5530377 |
atagtataggaaatttgactttatgttaatgtttatagacaactaatgtgctttgttttttaaggtgggaatttggagggacttctcttgatcgttccaa |
5530476 |
T |
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| Q |
461 |
gggaaataaaagaaattggtaagttttatttcatgatgataatattatactatatgttatatt |
523 |
Q |
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| T |
5530477 |
gggaaataaaagaaattggtaagttttatttcatggtgataatattatactatatgttatatt |
5530539 |
T |
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