View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2605_high_2 (Length: 958)
Name: NF2605_high_2
Description: NF2605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2605_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-128; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 488 - 724
Target Start/End: Complemental strand, 33094006 - 33093770
Alignment:
| Q |
488 |
cctgattcaccttcacctagcccatcatcatagatgtagctaaagttatttttctagcaaaaataatgttgattgtatcattatgtgattcttattttaa |
587 |
Q |
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| T |
33094006 |
cctgattcaccttcacctagcccatcatcatagatgtagctaaagttatttttctagcaaaaataatgttgattgtatcattatgtgattcttattttaa |
33093907 |
T |
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| Q |
588 |
cagagtagaaatatattcaatttagtttagttatgagagcgacaacgcttttactccatgcttgcaagtggaaatatattatattaccatatcatatatg |
687 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33093906 |
cagagtagaaatatattcaatttagtttagttatgagagcgacaacgcttttactccatgcttgcaagtggaaatatattatattaccatatcatatatg |
33093807 |
T |
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| Q |
688 |
tttaatgagctcaattctctcatctattattattggg |
724 |
Q |
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| T |
33093806 |
tttaatgagctcaattctctcatctgttattattggg |
33093770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 183; E-Value: 2e-98
Query Start/End: Original strand, 726 - 935
Target Start/End: Complemental strand, 33093734 - 33093524
Alignment:
| Q |
726 |
cataatttgtttagtatggttatcatcaaattcatgctttaaattaatctatttgtgtattttagtaggcgggcccaattttttattggtaagttgttcc |
825 |
Q |
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| T |
33093734 |
cataatttgtttagtatggttatcatcaaattcatgctttaaattaatctatttgtgtattttagtaggcggacccaattttttattggtaagttgttcc |
33093635 |
T |
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| Q |
826 |
ctcgagtggttttttaatttgaaaacgtaagggagaaattttagtatttatt-aaaattagagagcaattaaacttatcgaatttgaccagggtcgttta |
924 |
Q |
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| T |
33093634 |
ctcgagtggttttttaatttgaaaatgtaagggagaaattttagtatttattaaaaattagagagcaattaaacttatcgaatttgactagagtcattta |
33093535 |
T |
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| Q |
925 |
taagattcagg |
935 |
Q |
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||||||||||| |
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| T |
33093534 |
taagattcagg |
33093524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 283 - 456
Target Start/End: Complemental strand, 33094181 - 33094008
Alignment:
| Q |
283 |
accaagtacaccttcaaattctaaaatgtctagtccacctcaagaatcaccaagctcacctcctgaatcgcccactttgcctctagcatcaccaagttca |
382 |
Q |
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||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
33094181 |
accaagtacacctccaaatcctaaaatgtctagtccacctcaagaatcaccaagctcacctcctgaatcacccactttgcctccagcatcaccaagttca |
33094082 |
T |
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| Q |
383 |
ccgtctgaatcgtgaaattctcctcctagatcgtccaattcgcctcttgaatcacccaattcacctgctgaatc |
456 |
Q |
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| T |
33094081 |
ccgtctgaatcgcgaaattctcatcctagatcgtccaattcgcctcttgaatcaccaaattcacctgctgaatc |
33094008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 87 - 178
Target Start/End: Complemental strand, 33100737 - 33100646
Alignment:
| Q |
87 |
agcgtaatttcttttgagacataaaatggtcttttgagaaatttgagtccttcattgcaaaatctcattcacctttaacaaagaggtggcga |
178 |
Q |
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| T |
33100737 |
agcgtaatttcttttgagacataaaatggtcttttgagaaatttgagtccttcattccaaaatctcattcacctttaacaaataggtggcga |
33100646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 206 - 282
Target Start/End: Complemental strand, 33094311 - 33094235
Alignment:
| Q |
206 |
gctttaaaaatttgtaattaattcatccttgtcgagacagacatggatggcccgatattccaattattcctggatgg |
282 |
Q |
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| T |
33094311 |
gctttaaaaatttgtaattaattcatccttgtcaagacatacatggatggcccgatattccaatcatacctggatgg |
33094235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 33100814 - 33100777
Alignment:
| Q |
10 |
ataatactaagagacacaccttcattgctattgttatt |
47 |
Q |
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| T |
33100814 |
ataatactaagagacacaccttcattgctattgttatt |
33100777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 249 - 282
Target Start/End: Complemental strand, 33094241 - 33094208
Alignment:
| Q |
249 |
tggatggcccgatattccaattattcctggatgg |
282 |
Q |
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| T |
33094241 |
tggatggcccgatattccaattattcctggatgg |
33094208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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