View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2605_high_20 (Length: 485)
Name: NF2605_high_20
Description: NF2605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2605_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 11 - 469
Target Start/End: Complemental strand, 42156017 - 42155569
Alignment:
| Q |
11 |
cacagagtccaacctttgttttctatgtttccaacctccttggattttcacctactggtagaccccaaaaccaaaatggtactttatatcaatggtacaa |
110 |
Q |
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| T |
42156017 |
cacagagtccaacctttgttttctatgtttccaacctccttggattttcacctactggtagaccccaaaaccaaaatggtactttat--caatggtacaa |
42155920 |
T |
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| Q |
111 |
aacaagaagtttgaagtaactttcctaaaatattagttgttagtttgttatattagttgctacaagatcactgtaaaaagtgttcattcatacattcatt |
210 |
Q |
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| T |
42155919 |
aacaagaagtttgaagtaactttcctaaaatattagttgttagtttgttatattagttgctacaagatcactgtaaaaagtgttcattcatacattcatt |
42155820 |
T |
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| Q |
211 |
tttaatcatcacactatcatttattcattttgttggactatattgtatagtacttctaaaaaataataattgttcgtgaaattgnnnnnnnnnnnnnncc |
310 |
Q |
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| T |
42155819 |
tttaatcatcacacta--------tcaatttgttggactatattgtatagtacttctaaaaaataataattgttcgtgaaattgttttttattttttccc |
42155728 |
T |
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| Q |
311 |
tgtttgtaacattgattacaggtttatggaaccactaacaacgggaaaatacccacaaagcatgcattgtcttgttggaaaatgattgccaaagttctct |
410 |
Q |
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| T |
42155727 |
tgtttgtaacattgattacaggtttatggaaccactaacaacgggaaaatacccacaaagcatgcattgtcttgttggaaaacgattgccaaagttctct |
42155628 |
T |
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| Q |
411 |
aaaaagcaagcaagactacttaaagggtcatttgatttcgttggactaaactattatac |
469 |
Q |
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| T |
42155627 |
aaaaagcaagcaagactacttaaagggtcatttgatttcgttggactaaactattatac |
42155569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 313 - 469
Target Start/End: Complemental strand, 42165880 - 42165724
Alignment:
| Q |
313 |
tttgtaacattgattacaggtttatggaaccactaacaacgggaaaatacccacaaagcatgcattgtcttgttggaaaatgattgccaaagttctctaa |
412 |
Q |
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| T |
42165880 |
tttgtaacaatgattacaggttcatggaaccactaacaacgggaaaatatccaaaaagcatgcgttcccttgttggaaaacgattgccaaatttctctaa |
42165781 |
T |
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| Q |
413 |
aaagcaagcaagactacttaaagggtcatttgatttcgttggactaaactattatac |
469 |
Q |
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| T |
42165780 |
aaagcaagcaagactacttaaagggtcatttgatttccttggactaaactattatac |
42165724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 313 - 469
Target Start/End: Original strand, 42291532 - 42291688
Alignment:
| Q |
313 |
tttgtaacattgattacaggtttatggaaccactaacaacgggaaaatacccacaaagcatgcattgtcttgttggaaaatgattgccaaagttctctaa |
412 |
Q |
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||||||| | ||||||||||| ||||||||||||||||| || |||| ||||||||||||| || ||||||||||||| |||||||||| |||||||| |
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| T |
42291532 |
tttgtaaaaatgattacaggtatatggaaccactaacaaaaggggaatatccacaaagcatgcgttctcttgttggaaaacgattgccaaatttctctaa |
42291631 |
T |
|
| Q |
413 |
aaagcaagcaagactacttaaagggtcatttgatttcgttggactaaactattatac |
469 |
Q |
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| T |
42291632 |
aaagcaagcaagactacttaaagggtcatttgatttccttggactaaactattatac |
42291688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 71 - 221
Target Start/End: Complemental strand, 42166080 - 42165932
Alignment:
| Q |
71 |
gaccccaaaaccaaaatggtactttatatcaatggtacaaaacaagaagtttgaagtaactttcctaaaatattagttgttagtttgttatattagttgc |
170 |
Q |
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||||| |||||||||| |||||||||| || |||| ||||||||||||||||||| | ||||| | ||| ||| || || ||||||||||||||| | |
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| T |
42166080 |
gacccaaaaaccaaaacggtactttat--cagtggtgcaaaacaagaagtttgaagaagctttcatgaaacgttaatttgtattttgttatattagttac |
42165983 |
T |
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| Q |
171 |
tacaagatcactgtaaaaagtgttcattcatacattcatttttaatcatca |
221 |
Q |
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| T |
42165982 |
ttcatgatcaccgtaaaaagtgatcatacattcattcatttctaatcatca |
42165932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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