View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2605_high_21 (Length: 467)
Name: NF2605_high_21
Description: NF2605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2605_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 2 - 306
Target Start/End: Complemental strand, 8271977 - 8271684
Alignment:
| Q |
2 |
ctagggcacaatcaattttcaacgatggagtccattcttgttgtaatagtggaatatttacgtttgtatgttccatcgtcacaattcaggcctttaagac |
101 |
Q |
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| T |
8271977 |
ctagagcacaatcaattttcaacaatggagtccattcttgttgtaatagtggaatgtttacatttgtatgttccatcgtcacaattcaggcctttaagaa |
8271878 |
T |
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| Q |
102 |
agctttgactttgagtaatacatgtgatgtaactttaacccactcctatagacaaggaacatacaatggttcctctaccatatttaagccaagaagctga |
201 |
Q |
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| T |
8271877 |
agctttgactttgagtaatacatgtgatgttactttaacccactcctatagacaa-----------tggttcctctaccatatttaagccaagaagctga |
8271789 |
T |
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| Q |
202 |
ttaagatgagtaagaagcagaatttcttgaggcaaacagtcaaggatttgatgaataaaaaattattcatgagacaaacatgttcttcaaagtgtaaatg |
301 |
Q |
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| T |
8271788 |
ttaagatgagtaagaagcagaatttcttgaggcaaacagtcaaggatttgatgaatcaaaaattattcatgagacaaacatgttcttcaaagtgtaaatg |
8271689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 304 - 379
Target Start/End: Complemental strand, 8270869 - 8270794
Alignment:
| Q |
304 |
tataacaatctcaaacatgttcttcaaaaaggcatttgtaacataaacatgtagtggtttcaacactcgttctaag |
379 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
8270869 |
tataacaatcgcaaacatgttcttcaaaaaggcatttgtaacataaacatgtagttgtttcaacactcgttataag |
8270794 |
T |
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