View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2605_high_23 (Length: 447)
Name: NF2605_high_23
Description: NF2605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2605_high_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Original strand, 23324140 - 23324569
Alignment:
| Q |
1 |
aaagggcggtggcagtgaaggaagtgtttttgattgtaatatttgtttagatttggctaagaatcctgtggttacttgttgtggtcatttgttttgttgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23324140 |
aaagggcggtggcagtgaaggaagtgtttttgattgtaatatttgtttagatttggctaagaatcctgtggttacttgttgtggtcatttgttttgttgg |
23324239 |
T |
|
| Q |
101 |
ccatgcttgtatagatggttgcatttaagatcatctcaaactaaagcatgccccgtttgcgagggagaagttaccgataagaatgttatacctatatatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23324240 |
ccatgcttgtatagatggttgcatttaagatcatctcaaactaaagcatgccccgtttgcaagggagaagttaccgataagaatgttatacctatatatg |
23324339 |
T |
|
| Q |
201 |
gtggtgagaataatgttgaggttcgtcacgaggattcaagttctactcttcaaatcccttccagacctaaggcaaggcatgtatctaatgattccagtca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23324340 |
gtggtgagaataatgttgaggttcgtcacgaggattcaagttctactcttcaaatcccttccagacctaaggcaaggcatgtatctaatgattccagtca |
23324439 |
T |
|
| Q |
301 |
aacaatacaatggagtgtagggcatcatggaaacatactggttgagcacgaggcatcttggagtccattcgaagattatggcatgcttgctgagtttcag |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
23324440 |
aacaatacaatggagtgtagggcatcatggaaacatactggttgagcacgaggcatcttggagtccagtcgaagattatggcatgcttgctgagtttcag |
23324539 |
T |
|
| Q |
401 |
ctagagctcgaagcatcttggagtctatac |
430 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
23324540 |
ctagagctcgaagcatcttggagtctatac |
23324569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 31 - 278
Target Start/End: Original strand, 23234983 - 23235230
Alignment:
| Q |
31 |
tgattgtaatatttgtttagatttggctaagaatcctgtggttacttgttgtggtcatttgttttgttggccatgcttgtatagatggttgcatttaaga |
130 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||| || ||| |||| ||||||||||| ||||||||||| || |||||||||||||||| || |
|
|
| T |
23234983 |
tgattgtaatatttgtttaggtttggctaaggatcctgttgtgactcgttgcggtcatttgttctgttggccatgtttatatagatggttgcattcggga |
23235082 |
T |
|
| Q |
131 |
tcatctcaaactaaagcatgccccgtttgcgagggagaagttaccgataagaatgttatacctatatatggtggtgagaataatgttgaggttcgtcacg |
230 |
Q |
| |
|
|||| | ||||| ||| || |||||| |||| ||||||| |||||||| ||||| |||||||||||||||| |||| |||| |||||| |||||| |
|
|
| T |
23235083 |
tcatacggcaataaagaatgtcctgtttgcaagggggaagttaaggataagaaggttattcctatatatggtggtgggaatgatgtcgaggttggtcacg |
23235182 |
T |
|
| Q |
231 |
aggattcaagttctactcttcaaatcccttccagacctaaggcaaggc |
278 |
Q |
| |
|
|||||||||| || ||||| ||||||||| ||||||||| ||||||| |
|
|
| T |
23235183 |
aggattcaagctccactctgcaaatccctcgcagacctaatgcaaggc |
23235230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 31 - 121
Target Start/End: Original strand, 23552754 - 23552844
Alignment:
| Q |
31 |
tgattgtaatatttgtttagatttggctaagaatcctgtggttacttgttgtggtcatttgttttgttggccatgcttgtatagatggttg |
121 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23552754 |
tgattgtaatatttgttttgatttggctaaggaacctgttcttacttgttgcggtcatttgttttgttggccatgcttgtatagatggttg |
23552844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 31 - 121
Target Start/End: Original strand, 23305274 - 23305364
Alignment:
| Q |
31 |
tgattgtaatatttgtttagatttggctaagaatcctgtggttacttgttgtggtcatttgttttgttggccatgcttgtatagatggttg |
121 |
Q |
| |
|
|||||||||||||||||| | ||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
23305274 |
tgattgtaatatttgttttgtattggctaaggatcctgttcttacttgttgtggccatttgttttgttggccatgcttgtatagatggttg |
23305364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 301 - 408
Target Start/End: Original strand, 23324608 - 23324715
Alignment:
| Q |
301 |
aacaatacaatggagtgtagggcatcatggaaacatactggttgagcacgaggcatcttggagtccattcgaagattatggcatgcttgctgagtttcag |
400 |
Q |
| |
|
||||||||| ||||| | |||||||||||| |||||| ||||||| |||||||||||||||| | ||||||||||||| |||||||| ||||||| || |
|
|
| T |
23324608 |
aacaatacattggagcatggggcatcatggagacatacctgttgagcccgaggcatcttggagtaccttcgaagattatgacatgcttgttgagtttgag |
23324707 |
T |
|
| Q |
401 |
ctagagct |
408 |
Q |
| |
|
| |||||| |
|
|
| T |
23324708 |
caagagct |
23324715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 276
Target Start/End: Original strand, 23552871 - 23553026
Alignment:
| Q |
127 |
aagatcatctcaaactaaagcatgccccgtttgcgagggagaagttaccgataagaatgttatacctatatatggtggtgagaataatgttgaggt---t |
223 |
Q |
| |
|
|||||| |||| | |||||| ||| || || ||| |||| |||||||| ||||||| ||||| || || |||||||||| |||| | |||||||| | |
|
|
| T |
23552871 |
aagatcctctctagctaaagaatgtcctgtctgcaagggtgaagttactgataagactgttactccaatttatggtggtgggaatgaagttgaggtggtt |
23552970 |
T |
|
| Q |
224 |
cgtcacgaggattcaagttct---actcttcaaatcccttccagacctaaggcaag |
276 |
Q |
| |
|
||| ||||||||||||||| ||||| ||||||||| |||||||||| ||||| |
|
|
| T |
23552971 |
cgtgctgaggattcaagttctaccactctgcaaatccctcccagacctaatgcaag |
23553026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 37120088 - 37120185
Alignment:
| Q |
27 |
tttttgattgtaatatttgtttagatttggctaagaatcctgtggttacttgttgtggtcatttgttttgttggccatgcttgtatagatggttgcat |
124 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| ||| | ||||| | ||||| ||||| ||| |||||||||||| ||||| ||| ||||| ||||| |
|
|
| T |
37120088 |
tttttgattgtaatatctgtttggatttggccaaggagcctgttttgacttgctgtggccatctgttttgttggcagtgcttatatcgatggctgcat |
37120185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 10174765 - 10174692
Alignment:
| Q |
29 |
tttgattgtaatatttgtttagatttggctaaga-atcctgtggttacttgttgtggtcatttgttttgttggcc |
102 |
Q |
| |
|
|||||||||||||||||||| ||| | || |||| ||||||| | || |||||||||||||||||||||||||| |
|
|
| T |
10174765 |
tttgattgtaatatttgtttggatattgc-aagagatcctgttttgacatgttgtggtcatttgttttgttggcc |
10174692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University